BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2608.p
         (858 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094978|ref|YP_001100053.1| 2-oxoglutarate dehydrogenase E1...   611   e-176

>gi|134094978|ref|YP_001100053.1| 2-oxoglutarate dehydrogenase E1
           component [Herminiimonas arsenicoxydans]
          Length = 952

 Score =  611 bits (1575), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 342/867 (39%), Positives = 493/867 (56%), Gaps = 50/867 (5%)

Query: 24  VQSFIEAYRNEGYRIADIDPLGTISLPEIAALLPQTHALEDED--IILAQHRLLDGLGLT 81
           V   I AYR  G   A++DPL       I  L P  +   D D  I+        G    
Sbjct: 94  VTQLIAAYRVLGNNWANLDPLQRQERRSIPQLEPAFYGFTDADMDIVFNISNTYFGTETA 153

Query: 82  TVKELTHHLSRLFCAALALDASGVRDEARRQWLFARLAARDHGAEPDAPERAAVLARLAA 141
           ++++L H L   +C ++  +   + D A++ WL  R  +        + ++  +L RL+A
Sbjct: 154 SLRDLLHALRDTYCRSIGPEFMYISDPAQKLWLQERFESIRSTPTFSSEKKKHILERLSA 213

Query: 142 AEQWEHYLQQDYPQAKRFSLEGCESLLLLMDALVERSSFYQLDQLFMAMPHRGRLNLLVN 201
           AE  E YL   Y   KRFSLEG ES +  +D +++R     + ++ + M HRGRLN+LVN
Sbjct: 214 AEGLERYLHTKYVGQKRFSLEGSESFIAALDEVIQRGGEKGVQEIVIGMAHRGRLNVLVN 273

Query: 202 LMQMPAAEIVAYFDPERTTPAAANAVDLPYHLGAQTVRATAHGKVGLLLAHNPSHLESAY 261
            +     E+ A F+        +   D+ YH G  +  +T  G V L LA NPSHLE   
Sbjct: 274 TLGKMPQELFAEFEGRHGDDLPSG--DVKYHQGFSSDISTPGGPVHLSLAFNPSHLEIVN 331

Query: 262 PVLLGMTRGYRARHPQAP-----LPASVVIHGDAAFCGQGVVMESLKLAQHPGYGVGGTV 316
           PV+ G  R    R  Q       LP  ++IHGDAAF GQGV+ME+L LAQ  GYG GGTV
Sbjct: 332 PVVEGSVRARIERRGQNDPSQQVLP--ILIHGDAAFAGQGVIMETLNLAQTRGYGTGGTV 389

Query: 317 HVIVNNQIGFTTPNPLDPENHGYCTDIARIVGAPVLHVNADQPEMVLRAARIAFDYRMQF 376
           H+I+NNQIGFTT +P D  +  YCTD+A+++ APV+HVN D PE V+ AA+IA DYR++F
Sbjct: 390 HIIINNQIGFTTSDPRDTRSTLYCTDVAKMIEAPVIHVNGDDPEAVVFAAQIALDYRLEF 449

Query: 377 GADVVIDLVGYRRWGHAEQDTATVTQPLLHGFIDKHPPVTQLYAQA----GWPGSEEGMA 432
             D+V+D+V YR+ GH EQDT  +TQPL++  I +HP   +LYA      G     E   
Sbjct: 450 RKDIVVDIVCYRKLGHNEQDTPALTQPLMYKKISQHPGTRKLYADKLFAQGTVAENEADD 509

Query: 433 LLAA----------SSQQALAAFKA----------SRVGSAAAAAAVPVSPAPVAGPDLL 472
           ++ A          +    ++ FK+          +R  + AA  AVP          L 
Sbjct: 510 MVKAYRDAMDAGKHTIDPVISNFKSKYAVDWLPFLNRKWTDAADTAVP----------LT 559

Query: 473 RIRQFVERMTHLPDGFEAHPTILRLIAQWQDCVSAPEQACSWNFAENMAYASLLAEGHGV 532
            +++  ER+T +P+ F+ HP + +++A  +  +   E    W   E++AYASL+A G+ V
Sbjct: 560 ELKRLAERVTVIPENFKVHPLVEKVLAD-RASMGRGEMNLDWGMGEHLAYASLVASGYAV 618

Query: 533 RISGMDVQRGTFMQRHAVWHAVDTAQGVQQAYWPLRQVAAPSAALEVINSPLSEEAVVGF 592
           R++G D  RGTF+ RHAV H  +  +    +Y PL+ ++   A   VI+S LSEEAV+ +
Sbjct: 619 RLTGQDAGRGTFVHRHAVLHDQNRERWDAGSYVPLQNISDQQAWFRVIDSVLSEEAVLAY 678

Query: 593 EYGFSVQAGANALVIWEAQFGDFVNGAQIMIDQYVTSGGGKWGYASALTLLLPHGYEGVG 652
           EYG+S  A  N LVIWEAQFGDF NGAQ++IDQ+++SG  KWG  S L ++LPHGYEG G
Sbjct: 679 EYGYST-AEPNTLVIWEAQFGDFANGAQVVIDQFISSGEVKWGRVSGLVMMLPHGYEGQG 737

Query: 653 PEHSTGYLSRMLLLCAGQNIRVACPTTSAQWFHLLREQALQAER-PLVVFTPKSVLHAQA 711
           PEHS+    R L LCA  N++V  PTT+AQ FHLLR Q ++  R PLV+ TPKS+L  + 
Sbjct: 738 PEHSSARPERFLQLCADNNMQVVQPTTAAQIFHLLRRQMIRKFRKPLVILTPKSLLRNK- 796

Query: 712 RSHSPLSALLQGAFQPLSDDPEAP-PVQQVRRVVLCSGKVRHDLAAARSQTVNDETVLLS 770
            + SPL+ L  G+FQ +  + +     ++V+RV+ CSG+V +DL  AR +   ++  ++ 
Sbjct: 797 EAGSPLTDLASGSFQTVIGEVDTSIDAKKVKRVIACSGRVYYDLVHARKERAQNDVAIVR 856

Query: 771 VEQLYPFPTQALGECLNSYPNLAEVIWVQEEERNQGAWLCVRDAIEAALPAGVPLRAVYR 830
           +EQLYPFP +A    L  +PN  +++W Q+E +NQGAW  ++  I   +  G  L    R
Sbjct: 857 IEQLYPFPHKAFAAELKKFPNFTDLVWAQDEPQNQGAWFQIQHNILENMSDGQKLAYAGR 916

Query: 831 PDTASGPTASKATHYAQQAALMQAVFA 857
           P +AS        HYAQQ  L++  F+
Sbjct: 917 PASASPAVGYYDKHYAQQKTLIETAFS 943


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,638,236
Number of extensions: 68429
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 858
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 768
Effective length of database: 703,797
Effective search space: 540516096
Effective search space used: 540516096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)