BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2607.p (598 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094163|ref|YP_001099238.1| putative two-component histidin... 240 1e-64 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 89 6e-19 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 84 2e-17 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 79 9e-16 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 72 6e-14 >gi|134094163|ref|YP_001099238.1| putative two-component histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 463 Score = 240 bits (613), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 170/256 (66%), Gaps = 8/256 (3%) Query: 332 VIYDISERKRAEEEIEALNADLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISGYAMI 391 ++++I R+RA+ +IE + A L NKELESFSYSVSHDLR+PLRAI GY+ + Sbjct: 214 ILWEIKHRRRAQRKIE-------KNAAQLELTNKELESFSYSVSHDLRSPLRAIDGYSRM 266 Query: 392 LEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDELVGQVI 451 EED+A +DD+GR L VIR + +KM LI+DLL ++ + + M+ LV +V Sbjct: 267 FEEDFADRLDDEGRRLLSVIRVSSKKMGQLIDDLLAFSRMGRKPVDSAKVDMNALVDEVW 326 Query: 452 AGLRQENPGV-AFEVPHLEGAVANRGLIAQVWENLLANAVKFSSKSEQPLVRVSMEVSAD 510 + + V + +L ++ L+ QVW NLLANAVK+SSK E+ +V ++ + S Sbjct: 327 TEVCASSKTVLPLKKTNLPAVWGDQALLRQVWMNLLANAVKYSSKKEEQIVEITAKQSEH 386 Query: 511 EYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQRIVIRHSGRVWAESQ 570 E +Y V DNGVGFDMR+ +KLFG FQRLH + E+ GTG+GLA+ QR+++RH GR+WAES+ Sbjct: 387 EVVYTVRDNGVGFDMRFYNKLFGVFQRLHTENEFPGTGVGLAIAQRVIVRHGGRIWAESK 446 Query: 571 PKQGASFYFALPRKHV 586 P + F F+LP++ V Sbjct: 447 PDEYTIFNFSLPKEAV 462 Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 28 VAGFSYHSVRDFEQHAVWLQHSYTVLNKLEEINATLRETVGNSRSYVVSGQEEY-RGNFD 86 ++ +++SV F + ++H++ V+ +++++ + L++ R Y+++G + + ++D Sbjct: 31 ISFITFNSVDQFASSSRLVEHTHLVIKQIDQVVSDLKDAESTQRGYLITGDGIFLKTHYD 90 Query: 87 AGERQVNVLLRELRNLVNDNPQQTQLLGRTDDLVAQRLAMSRQLM-------ALNPEEGR 139 Q+ + LR L DNP Q + + + L+ +++A+ R + A + +E Sbjct: 91 ILA-QLPSQIATLRGLTYDNPAQRKSIDVFEGLIDKKIAVMRSGINALEERNAFHSDEIA 149 Query: 140 ARV-LEGKDLGDRIRSNVELMKGNENTLLATRAKDTAVSANLTIFMVISGSLLSIALLLL 198 A V EG+ D++R LM E LL RA++ A T ++ G+LL+I LLL Sbjct: 150 ALVGGEGRLAMDQLREQSSLMIMVEEKLLLQRAQEVEAKARSTKLWILFGNLLAIVLLLS 209 Query: 199 VYRKLRREMARRVEAQQRAQAYSDEIE 225 + + E+ R AQ++ + + ++E Sbjct: 210 AFWLILWEIKHRRRAQRKIEKNAAQLE 236 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 14/222 (6%) Query: 369 SFSYSVSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKL 428 S ++SHDLR PL ++ G + L + +E Q + R+M L+++LL + Sbjct: 687 SLLSALSHDLRTPLTSLVGLSESLTMS-KPPLTSSQQELAQALHDEARRMSNLVSNLLDM 745 Query: 429 AKSTTGEL--TLQRFSMDELVGQVIAGLRQENPGVAFE------VPHLEGAVANRGLIAQ 480 A+ +GE+ LQ +E+VG + LR +A P L + LI + Sbjct: 746 ARIQSGEVKFNLQWLQFEEVVG---SALRASQSAIAHHEIKTRLAPDLPLVRFDAVLIER 802 Query: 481 VWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 V NL+ NA K++ + + ++ E+S V+DNG G +F F R R Sbjct: 803 VLCNLIENAAKYTPAGSR--IVIAAEISGRFLEVSVYDNGPGLPAGQEEAIFDKFTRGER 860 Query: 541 QEEYAGTGIGLALVQRIVIRHSGRVWAESQPKQGASFYFALP 582 + G G+GLA+ + IV H G + A P GAS F LP Sbjct: 861 ESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 30/261 (11%) Query: 346 IEALNADLERQA-----------QHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEE 394 +E L+ DLERQ + N+ F +SH++R P+ + G +++ Sbjct: 157 LENLSRDLERQVLERTHDLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLG---MMQL 213 Query: 395 DYAQAIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQ--RFSMDELVGQVIA 452 AQA D + RE L+ + + + ++ND+L +K +G L + F + + V VI Sbjct: 214 ALAQASDVEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIE 273 Query: 453 GLRQENPGVAF--------EVPHLEGAVANRGLIAQVWENLLANAVKFSSKSEQPLVRVS 504 + G A ++P L + G + QV NL+ NA+KF+ + L Sbjct: 274 LMSARMQGAALSLNAECDADLPRL--LTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIER 331 Query: 505 MEVSADEYI--YGVHDNGVGFDMRYAHKLFGTFQRLHRQ--EEYAGTGIGLALVQRIVIR 560 + S + + V D+G+G +LF +F + + GTG+GL++ ++IV Sbjct: 332 LPASGTQIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEM 391 Query: 561 HSGRVWAESQPKQGASFYFAL 581 G + ES P +G+ F+F L Sbjct: 392 QRGCIGVESTPGEGSRFWFEL 412 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 29/247 (11%) Query: 352 DLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEE-DYAQAIDDKGREQLQV 410 D++ +A+ S N E F ++H+LR+PL I+ A +L + A + K + Sbjct: 94 DMQAKAE---SANHRQEEFLSMLAHELRSPLAPIAMAADLLGKITTAHPMLPK---LYGI 147 Query: 411 IRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDELVGQVIAG--------LRQENPGVA 462 I R V M L++DLL ++ +TG +TLQ+ S+ L+ ++I + Q N + Sbjct: 148 ISRQVGHMAHLVDDLLDASRVSTGNITLQKRSL--LLSEIIDSAVETSQPFINQRNQQLT 205 Query: 463 FEVPHLEGAVANRGLI--AQVWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNG 520 +P + V N L+ AQ + NL+ NA KF+ + +S +V AD + DNG Sbjct: 206 ITLPE-DTVVINGDLVRLAQAFANLIINATKFTPVDGH--IDISAQVLADVVKVSIKDNG 262 Query: 521 VGFDMRYAHKLFGTFQR----LHRQEEYAGTGIGLALVQRIVIRHSGRVWAESQP-KQGA 575 +G +F F++ L R + G GIGL+LV+ +V H G V S G+ Sbjct: 263 MGIAPDIQPFIFDLFRQGPHSLDRSQ--GGLGIGLSLVRTVVQMHGGTVSVYSAGLGCGS 320 Query: 576 SFYFALP 582 F+ LP Sbjct: 321 EFFVVLP 327 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 122/256 (47%), Gaps = 18/256 (7%) Query: 344 EEIEA---LNADLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAQAI 400 +EIEA + L+ + N+ + +SH+LR+PL +I GY+ IL ++ + + Sbjct: 100 QEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQILLKN--EHL 157 Query: 401 DDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQR--FSMDELVGQVIAGLRQEN 458 R +Q I R+ + L+++LL LA+ + L+ + + +++ +R + Sbjct: 158 AAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLLSMVRPQA 217 Query: 459 PGVAFEVPHLEGAVANRGLIA------QVWENLLANAVKFSSKSEQPLVRVSMEVSADEY 512 ++ +R ++A Q++ NLL NAV+F+ V + +E S Sbjct: 218 EAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGS---VTLHVECSPASV 274 Query: 513 IYGVHDNGVGFDMRYAHKLFGTFQR--LHRQEEYAGTGIGLALVQRIVIRHSGRVWAESQ 570 + V D G+G ++ ++F F+R R G G+GLA+ +++++ +G + S Sbjct: 275 RFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILLMNGSLNLVSM 334 Query: 571 PKQGASFYFALPRKHV 586 QG++F LP + Sbjct: 335 QGQGSTFIVRLPLTEI 350 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 976,094 Number of extensions: 37025 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 16 Length of query: 598 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 511 Effective length of database: 713,682 Effective search space: 364691502 Effective search space used: 364691502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)