BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2606.p
         (140 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote...    95   1e-21

>gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 818

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 5/134 (3%)

Query: 5   LRVLFVEDMEEDAVLMVRELKRGGFEPSWQRVDDEQALLAALHEQRWDIVISDYSMPMFS 64
           +++L VED   DA L  RELKR G     +RV+ EQ L   L + + D+V+SD+SMP F 
Sbjct: 2   IKILMVEDTPTDAELASRELKRSGILHQARRVETEQELRHELADFKPDVVLSDFSMPHFD 61

Query: 65  GVEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLSSRWRPAHRTMWPSSSTP 124
           G+ ALK+V+ +   TPFI VSG IGE+ A+E +K GA DY + +       +  PS+ T 
Sbjct: 62  GLSALKVVRQELPDTPFIFVSGRIGEELAIESLKLGASDYVIKTNL-----SRLPSAVTR 116

Query: 125 PAPPANPRASAIRI 138
                  R +  RI
Sbjct: 117 AMEHVEQRDARRRI 130


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 222,090
Number of extensions: 7931
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 67
Effective length of database: 759,812
Effective search space: 50907404
Effective search space used: 50907404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)