BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2605.p
         (442 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA liga...    83   2e-17

>gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 143 SRLRVAYTGGEAIGPDLFDFYRSL-GINLKQLYGMTETCVTVCMQPSGDVKLD-SVGRPM 200
           S L++   GG A+   + D +R + G ++ + YG++ET       P    +   ++G P+
Sbjct: 328 SELKLCNGGGMAVQQVVNDRWRVVTGCSIIEGYGLSETSPVATSNPVETTEFSGTIGLPV 387

Query: 201 KGVEVRI-DAN---------GEVLVRSPGLMKEYFKRPDATAEAIDQDGYFHTGDAGFFD 250
              EV I D+N         GE+ +R P +M  Y+  P  TA+A+  DG+F TGD G  D
Sbjct: 388 PSTEVMILDSNDNEVALGLSGEIAIRGPQVMAGYWNNPAETAQAMTADGFFKTGDIGVMD 447

Query: 251 SDGHLKIIDRAKDVGKMASGSMFAPKYIENKLKFFPFIKEAVTFG 295
           + G+ +I+DR KD+  + SG    P  IEN +   P + E    G
Sbjct: 448 ARGYTRIVDRKKDM-ILVSGFNVYPSEIENVVAGHPGVLECACIG 491


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 866,276
Number of extensions: 37239
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 357
Effective length of database: 720,272
Effective search space: 257137104
Effective search space used: 257137104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)