BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2604.p (293 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 231 3e-62 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 194 3e-51 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 169 2e-43 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 134 4e-33 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 134 4e-33 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 231 bits (590), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 160/254 (62%), Gaps = 1/254 (0%) Query: 40 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQI 99 ++IL++ N+S FGG++ALTD++ + + +I +IGPNGAGK++ NVI G+Y G Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 100 LYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGA 159 G+ P +A+ GIARTFQNI LF MT L+N+M GR+ + GL A Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 160 ARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMA 219 AR EE A R + E++DF+ I L YG Q+R+E+ARALA +P +L LDEP A Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 220 GMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVM 279 GMN EK + ++ + + G TI+LIEHD+ +VM + DR+ VLDYGK I +G P +V Sbjct: 188 GMNATEKLGLRELLVKIKAE-GKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQ 246 Query: 280 NNPEVIKAYLGTSH 293 NP VI+AYLG SH Sbjct: 247 KNPAVIEAYLGGSH 260 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 194 bits (494), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 162/272 (59%), Gaps = 3/272 (1%) Query: 20 PVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGA 79 P + D EA + + G L ++++++FGG+ A +S ++ + ++IGPNGA Sbjct: 327 PCVNADTEA--LLKSDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGA 384 Query: 80 GKSSMINVINGVYHPQKGQILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIM 139 GKS+ IN ++G Y P G I + GQ +AR G+ARTFQN LF MT L+N++ Sbjct: 385 GKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVL 444 Query: 140 TGRNTKMRSGLLSNAMWWGAARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRV 199 G +++ RSGL + + + ++E + + +++++ + + LP+G Q+R+ Sbjct: 445 VGADSRYRSGLFATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRL 504 Query: 200 ELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISD 259 E+ARALA P +LLLDEP AG+ E +D+ + I ++ T++L+EH + ++M +SD Sbjct: 505 EIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASH-QITVLLVEHHVDMIMAVSD 563 Query: 260 RVVVLDYGKKIGDGTPDEVMNNPEVIKAYLGT 291 V VLDYGK I GT EV +NP VI+AY GT Sbjct: 564 HVTVLDYGKVIASGTVAEVRSNPAVIEAYFGT 595 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/262 (37%), Positives = 152/262 (58%), Gaps = 3/262 (1%) Query: 32 AANGRRIGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGV 91 A+ G ++ +++++ FGG+ AL ++ + E E+ ++GPNG+GK++ NV+ G+ Sbjct: 12 ASMGSSTATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGL 71 Query: 92 YHPQKGQILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLL 151 Y G I+Y+G+ +G P I R G+ARTFQ L +TV DNI+ G M+ GL Sbjct: 72 YKASSGSIIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLF 131 Query: 152 SNAMWWGAARNEEIAHRRKVEEVIDFLEIQHIRKT--PVGRLPYGLQKRVELARALAAEP 209 N A R E A+ KVE ++ + + PV ++R+E+ RAL +EP Sbjct: 132 FNLFRRKAFRAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEP 191 Query: 210 HMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGT-TIVLIEHDMGVVMDISDRVVVLDYGK 268 +LLLDEP AGM +E + + IL V ++ T+VLIEH+M V+ I+DR +V +YGK Sbjct: 192 RLLLLDEPSAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGK 251 Query: 269 KIGDGTPDEVMNNPEVIKAYLG 290 KI +GT E+ +P V AYLG Sbjct: 252 KIAEGTYAEITADPNVQTAYLG 273 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 138/251 (54%), Gaps = 16/251 (6%) Query: 43 LDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQILYR 102 ++++NI+ FG AL D+S + E+ A++GP+G GK++++ +I G+ P GQ+L Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 103 GQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARN 162 G+ H + + + FQ+ ALFK MTV +NI G + A R Sbjct: 63 GEDASARH---VRERQVGFVFQHYALFKHMTVFENIAFGLRVRP-----------AATRP 108 Query: 163 EEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMN 222 E + KV ++++ +++ + +L G ++R+ LARALA EP +LLLDEP ++ Sbjct: 109 SESVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALD 168 Query: 223 VEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMNNP 282 + ++++ R++ ++D+ T + + HD ++++D++V+++ G G P +V NNP Sbjct: 169 AKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNP 228 Query: 283 E--VIKAYLGT 291 + +LG Sbjct: 229 ASPFVYGFLGN 239 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 132/256 (51%), Gaps = 14/256 (5%) Query: 40 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQI 99 +V+L Q IS +G AL ++ V E +++GPNGAGK++++NV+ G++ P G + Sbjct: 5 DVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNV 64 Query: 100 LYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGA 159 + G G+ +A +G+AR FQ ++F +TV + I + + N W G Sbjct: 65 HFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYL------NMRWNGF 118 Query: 160 ARNEEIAHRRKVEEVI----DFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLD 215 + RKV +++ D + T LP+G +K +++A A A P ++LLD Sbjct: 119 G---SLFGSRKVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLD 175 Query: 216 EPMAGMNVEEKQDMCRFILDVNDQFGT-TIVLIEHDMGVVMDISDRVVVLDYGKKIGDGT 274 EP AG++ +K + +L G I+L+EHDM +V S R++ + GKKI D Sbjct: 176 EPTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLP 235 Query: 275 PDEVMNNPEVIKAYLG 290 DE N E+I +G Sbjct: 236 RDEFFANEEIISIVVG 251 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 576,847 Number of extensions: 24785 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 48 Length of query: 293 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 212 Effective length of database: 733,452 Effective search space: 155491824 Effective search space used: 155491824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)