BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2602.p (358 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095638|ref|YP_001100713.1| high-affinity branched-chain am... 111 6e-26 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 110 2e-25 gi|134096409|ref|YP_001101484.1| putative high-affinity branched... 82 3e-17 gi|134093664|ref|YP_001098739.1| putative ABC transporter permea... 80 1e-16 >gi|134095638|ref|YP_001100713.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 404 Score = 111 bits (277), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 165/347 (47%), Gaps = 57/347 (16%) Query: 57 LVFALAALGLNVLTGYAGQLSLGSAAFMAVGAY-----AAYNFQLRVEGI-----PIVAT 106 L++ + ALGLN++ G+AG L LG AF A+GAY A+ F + +E PI A Sbjct: 47 LLYIMLALGLNIVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPPIGAA 106 Query: 107 LILSGGC---------------------AALVGVLFGLPSLRIKGFYLAVATLAAQFFVV 145 L+ G A G L G P+L+++G YLA+ TL + Sbjct: 107 LMWVFGSEIAQNGIHLSLWVIVPLAVLVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIR 166 Query: 146 WALTKF--PWFSNNSSSGVISTPKIDLFGIAID----------------TPVRKYLFVLA 187 + P N G+ I +FG++++ V Y F+ Sbjct: 167 IFMNNLNGPVNITNGPQGINMIDPIRIFGVSLNGDEGSASTVMLGNYAMPSVNAYYFLFL 226 Query: 188 VVSV-LALVAKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGAL 246 V+ + + ++ L S GRA++A+R+ ++AA+ +GI KL AFA+ + + GVAGA+ Sbjct: 227 VLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAM 286 Query: 247 YAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSILGSFLGSAFILLLPIFLDNALPPLA- 305 +A + G V P+ FSL S +L M+++GG+G I G LG + LP L + + PL Sbjct: 287 FA-SFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGILLAALPEVLRHVVEPLQR 345 Query: 306 ALLHLPFTNATVSHIQMMVFGALIIFFLIAEPHGLARLWQIAKEKLR 352 L +A + ++ +++G ++ ++ P G LW + + R Sbjct: 346 TLFGEVLIDAEI--LRQLLYGLAMVLIMLIRPAG---LWPAPRHEDR 387 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 149/266 (56%), Gaps = 21/266 (7%) Query: 42 LLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAA------YNFQ 95 ++ +EY I + L++AL ALGLN+LTG G +SLG A A+GAY + + F Sbjct: 28 MVANEYELR-IWMLLLIYALVALGLNILTGLTGLVSLGQAGLFAIGAYTSAVLSTKFGFG 86 Query: 96 LRVEGIPIVATLILSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFS 155 L G IVA +ILS A GVL P++R++G YL V T+A F ++ W S Sbjct: 87 L---GTCIVAAMILS----AAFGVLLSYPTVRVRGVYLTVITIA--FGIIVENVAIEWSS 137 Query: 156 -NNSSSGVISTPKIDLFGIAIDTPVRKYLFVLAVVSVLALVAK-NLVRSSTGRAWMAVRD 213 +G+ S P +FG+ ++ K+ +VLA++ +LA + NL++S GRA AV Sbjct: 138 LTGGPNGISSIPTPTMFGLPLEDT--KFFYVLAILFLLAFLLHYNLIKSRFGRAMRAVSQ 195 Query: 214 MDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMII 273 + AA +GI + ++ +F +++ + G AGA YAF V PD F D S R L M+I Sbjct: 196 SETAARTVGINPIVMRMMSFVIAAAFAGAAGATYAFLNQ-YVNPDTFRFDDSVRFLLMVI 254 Query: 274 IGGVGSILGSFLGSAFILLLPIFLDN 299 +GG G+++G LG+ + +P +L + Sbjct: 255 LGGSGTVIGPALGATILTFIPEYLQS 280 >gi|134096409|ref|YP_001101484.1| putative high-affinity branched-chain amino acid transport system permease protein braE [Herminiimonas arsenicoxydans] Length = 388 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 27/292 (9%) Query: 57 LVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVEGIPIVATLILSGGCAAL 116 L++A A +GL V G++G + AAF +G+Y G+P + T+ +SG AA+ Sbjct: 101 LLYATACMGLTVQFGFSGVSNFAGAAFFGIGSYTTAVLATH-TGLPTLVTIAISGIVAAV 159 Query: 117 VGVLFGLPSLRIKGFYLAVATLA-----AQFFVVWALTKFP---WFSNNSSSGVISTPKI 168 +G + P LR +G Y A+ T+A F V + P + G Sbjct: 160 IGSILIWPVLRTRGHYAALVTIAFGILFKTFLEVNDVLGGPQGLQVPGMTLFGHAFNDNF 219 Query: 169 DLFGIAIDTPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRT 228 LFG+ V L L + + ++ K L RS G + VR + AA G+ ++R Sbjct: 220 TLFGVEFSFYVNYVLLSLLLFVCVFVLVKALERSWVGLSMDVVRTDETAASTFGLHIVRW 279 Query: 229 KLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSILGSFLGSA 288 K+ AF + + + GVAG++Y +G V P+ F+ S +L + I+GG+G+++G + Sbjct: 280 KVIAFTLGNLFAGVAGSIYGMM-VGFVAPNNFTFADSLLLLSITILGGLGNVIGLIPAAI 338 Query: 289 FILLLPIFLDNALPPLAALLHLPFTNATVSHIQMMVFGALIIFFLIAEPHGL 340 +L+LP L F + +++++ AL+I L+ P GL Sbjct: 339 IVLMLP-------------EKLQF----IQEYRVLLYAALVIAILLFRPDGL 373 >gi|134093664|ref|YP_001098739.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 343 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 127/274 (46%), Gaps = 30/274 (10%) Query: 36 AFVGVPLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMA---------V 86 A V PL+ S+Y+ + +L+PF +A+ LG N+L GY G LS G A F+A V Sbjct: 39 ALVIAPLIVSQYYMT-LLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAALV 97 Query: 87 GAYAAYNFQLRVEGIPIVATLILSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVW 146 +F+L + IVA+ I+S A L R G + + TL+ Sbjct: 98 SKTGMVSFELMLL-TAIVASTIISIPIAWLAS--------RFTGIFFGMLTLSFGMLFHS 148 Query: 147 ALTKFPWFSNNSSSGVISTPKIDLFGIAIDTPVRK-------YLFVLAVVSVLALVAKNL 199 L KF + + S + P+ LFG+ +D + Y + L ++ +L LV + Sbjct: 149 FLNKFYYITGGDSG--MRVPRPTLFGMELDQFDKTAFLGGPFYYYCLVMILLLTLVMWRI 206 Query: 200 VRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDG 259 VRS G MA RD V A +G+ + + AF +S+ Y + G + G +P+ Sbjct: 207 VRSPYGIHLMASRDNAVKALYLGVKIRSVRAIAFVISAVYASIGGVILG-VNTGLADPEL 265 Query: 260 FSLDLSFRILFMIIIGGVGSILGSFLGS-AFILL 292 S ++FM ++GG LG LG+ FILL Sbjct: 266 AYWTHSGHLVFMAVLGGYQEFLGPVLGAFVFILL 299 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.331 0.144 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 528,078 Number of extensions: 17127 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 4 Length of query: 358 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 275 Effective length of database: 726,862 Effective search space: 199887050 Effective search space used: 199887050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)