BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2600.p (288 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 197 4e-52 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 174 5e-45 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 174 6e-45 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 100 9e-23 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 99 2e-22 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 197 bits (502), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 159/240 (66%), Gaps = 6/240 (2%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L I ++V Y I +KG+ LDV +G ++ L+GANGAGK+TTLKAI+ L R D Sbjct: 6 LKIAGLKVAYGG-IQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVD--- 61 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G IE+ G+ + + +LV++ + V EGR F ++++ENLL GA+TR + ++ Sbjct: 62 GHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQG-IADDM 120 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 EK +A FPRLK R +G SGGEQQM A+ RA+M+ P ++LLDEPSMGL+P +VE+IF Sbjct: 121 EKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIF 180 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 E+++ + + + ++ LL EQN +AL+ A Y++E+G + M+G A ++ ++ V+E YLG Sbjct: 181 EVIRSV-AAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLG 239 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 174 bits (441), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 144/240 (60%), Gaps = 8/240 (3%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 LS+ + YD V VL VS++V G+I +LGANGAGKST +++I L +G++ Sbjct: 4 LSVKGLTTGYDKVN-VLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILW 62 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 GE+ + ++ G+ + EGR F ++V ENL GA+ + A V+ L Sbjct: 63 NGRNLAGEKT-----HAIIASGISCIPEGRKVFPRMSVAENLALGAFLV-TNSAVVRERL 116 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 ++Y FPRLK R +G SGGEQ M +IGR +MA+P ++++DEPS+GL+P V+E F Sbjct: 117 ARVYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENF 176 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 +++ +N+ ++ LL EQN L + +GY+L GRV+ EG A ELA N+DV+ Y G Sbjct: 177 NVIRRINAL-GITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 174 bits (440), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 150/242 (61%), Gaps = 9/242 (3%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L + N+ V Y H I +G+S++V EG V ++G+NGAGKS+ LKAI+ ++ G +T Sbjct: 6 LKVENLCVNYGH-IEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISH--AEVKH 143 G G+ V + +++V +GV V EGR F +VE+NL+ G + + A ++ Sbjct: 65 G-----GKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRD 119 Query: 144 ELEKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEE 203 ++++++ FPRLK RR Q+G SGGEQQM I R +M+ P ++L+DE S+GLAP+I++ Sbjct: 120 DIDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDF 179 Query: 204 IFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFY 263 +F ++ DLN ++ +S LL EQ AL Y++ENG V + G +S+L + V E Y Sbjct: 180 LFPVLVDLN-RQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAY 238 Query: 264 LG 265 LG Sbjct: 239 LG 240 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 100 bits (249), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 25 ALSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVT 84 +L++ N+ VI VL+ +S+ + G +V L+G NGAGKSTT ++I + Sbjct: 2 SLALENVNVILAGNP-VLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQ-----PLK 55 Query: 85 KGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHE 144 G+I+++ ++ M + +V+ G+ EG FG LTVE+N+ +TR S + Sbjct: 56 SGAIKWKRSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRK-SGRSAQER 114 Query: 145 LEKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEI 204 +++ YA FP+LK SGGE++M +I RA+ P ++LLDE GL+P I+ I Sbjct: 115 IDEAYAVFPKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTI 174 Query: 205 FEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASE 252 E ++ + K+ LLAE N +AD Y++E G +V EG ++ Sbjct: 175 SEGLQSI-LKQGRGVLLAESNFYHLPPFADRLYVIERGEIVFEGTLAQ 221 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 12/230 (5%) Query: 41 VLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTP 100 V++ V+L V G ++ LLG NGAGK+T+ I L+ ++ G IE G + R Sbjct: 19 VVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSD-----AGRIELDGVDISRQPI 73 Query: 101 NDLVKRGVIQVMEGRHCFGHLTVEENL-----LTGAYTRGISHAEVKHELEKIYAYFPRL 155 + + G+ + + F L+VE+N+ L + +S +++ L+ + A ++ Sbjct: 74 HKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTLLADL-QI 132 Query: 156 KVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKE 215 + R++Q+ SGGE++ I RA+ P +LLDEP G+ P V EI IV+ L + Sbjct: 133 EKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVRFLKER- 191 Query: 216 KVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 + L+ + N L D YI+ G V+ G ++ +E V+ YLG Sbjct: 192 GIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 495,704 Number of extensions: 19980 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 38 Length of query: 288 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 207 Effective length of database: 733,452 Effective search space: 151824564 Effective search space used: 151824564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)