BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2589.p (306 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 408 e-115 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 147 6e-37 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 143 1e-35 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 122 2e-29 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 122 2e-29 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 187/277 (67%), Positives = 223/277 (80%) Query: 27 MQFTYIGPQIEQLLGWTPESWKSADDWAMRIHADEREAVVNFCISQSKAGADHEADYRAL 86 M F YIGPQIE LLGW+ SW SA DWA R+H ++R VVNFC++QSK G DHEADYRAL Sbjct: 1 MTFAYIGPQIEALLGWSSSSWVSAQDWADRMHPEDRAWVVNFCVAQSKDGTDHEADYRAL 60 Query: 87 TRDGEHVWIRDVVHVVRNPDGSPNALIGFMFDITERKKTEARLIELQKELEALSYRDGLT 146 T+DG +VWIRDVVHV+RN DG ALIGFMFDI+ERKKTEA+LI+LQKELE LS++DGLT Sbjct: 61 TKDGNYVWIRDVVHVMRNADGEVEALIGFMFDISERKKTEAKLIDLQKELETLSFKDGLT 120 Query: 147 NVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYNDHYGHIRGDECLKQVAQLLS 206 VANRRMFDS + EWANA PLS+IMLDIDYFKQYNDHYGHI+GD+CLK+VA +LS Sbjct: 121 GVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQGDDCLKRVANILS 180 Query: 207 QTATRSRDFFARYGGEEFVLILPECDEKAALQVAQRCRSLIAQAAIPHAGSQVAPHITIS 266 RSRDFFAR+GGEEF+L+LPE DE A+ +A+RCR+LI + IPH S+V P IT+S Sbjct: 181 SATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIPHEKSEVIPMITVS 240 Query: 267 QGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRNCIA 303 GV T++P+ D I F+E D+RLY+AKQ GRNCIA Sbjct: 241 LGVGTVIPTDKDDPIRFIEEVDKRLYQAKQRGRNCIA 277 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 143/283 (50%), Gaps = 15/283 (5%) Query: 31 YIGPQIEQLLGWTPESWKSADDWAMRIHADEREAVVNFCISQSKAGADHEADYRALTRDG 90 + P EQL G+ E + ++ D+ + ++ + + G R +DG Sbjct: 32 FANPAFEQLSGYDLEDILGRNCRFLQ-GTDQAQRNISILANSLEKGKHSIVTLRNYRKDG 90 Query: 91 EHVWIRDVVHVVRNPDGSPNALIGFMFDIT------ERKKTEARLIELQKE-LEALSYRD 143 W + V + G IG D+T +R + E RL+E KE LE L D Sbjct: 91 SLFWNELSISPVFDQSGVLTHFIGIQKDVTARVVLEQRLRKERRLLERDKENLEQLVVHD 150 Query: 144 GLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYNDHYGHIRGDECLKQVAQ 203 LT + +R+ F+ L W I T+ L ++ +D+DYFK +ND YGHI GD+ L++VA Sbjct: 151 TLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDYFKGFNDTYGHIAGDDALRKVAS 210 Query: 204 LLSQTATRSRDFFARYGGEEFVLILPECD-EKAALQVAQRCRSLIAQAAIPHAGSQVAPH 262 +L + R +F AR+GGEEF+++ E E+A + CRS + IPHA S PH Sbjct: 211 ILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAIMHAENLCRS-VRDLDIPHAAS---PH 266 Query: 263 --ITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRNCIA 303 +TIS GV + PS M Q LE AD LY+AK GRN +A Sbjct: 267 QFLTISCGVVRMKPSSMAQPEVLLEQADSALYQAKARGRNQVA 309 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 11/196 (5%) Query: 119 ITERKKTEARLIELQKELE-------ALSYRDGLTNVANRRMFDSALEVEWANAISTRAP 171 IT R++ ++ L + +LE AL+ D LT +ANRR FD+AL+ E+A A+ + Sbjct: 319 ITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTS 378 Query: 172 LSLIMLDIDYFKQYNDHYGHIRGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPEC 231 L+LIMLD+D+FK+YND YGH +GDECLK+++++L R+ D ARYGGEEFV++LP Sbjct: 379 LALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGT 438 Query: 232 DEKAALQVAQRCRSLIAQAAIPHAGSQVAPHITISQGVSTIVPS-PMDQRIDFLELADRR 290 D A VA+R R I + HA + +T S G++ ++P + + AD+ Sbjct: 439 DRAGAAAVAERVRLAIQALNMEHAETPDGI-VTASLGIAALIPQRQQNSPQQLVHAADQA 497 Query: 291 LYRAKQLGRN--CIAV 304 LY+AK+ GRN CI+ Sbjct: 498 LYKAKEDGRNQSCIST 513 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 10/182 (5%) Query: 124 KTEARLIELQK---ELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDID 180 K AR ELQ+ LE L+ D LT +ANR + L E+A ++ P ++MLD+D Sbjct: 383 KVSARTAELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVD 442 Query: 181 YFKQYNDHYGHIRGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVA 240 +FK+ ND YGH GDE LK VA +LS T R DF R+GGEEF+ ILP D AA+ VA Sbjct: 443 FFKRVNDIYGHGVGDEVLKHVASILSAT-VRKTDFVGRHGGEEFLSILPMTDSSAAMVVA 501 Query: 241 QRCRSLIAQAAIPHAGSQVAPHITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRN 300 ++ R+ I I G ++T+S GV + + +++ + AD +Y+AK+ GRN Sbjct: 502 EKIRNTIESTPIGPVG-----NLTVSIGVQEVTVNDINEDVAVTR-ADECMYQAKKSGRN 555 Query: 301 CI 302 + Sbjct: 556 KV 557 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 5/172 (2%) Query: 133 QKELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYNDHYGHI 192 Q+ELE ++RD LT NRR FD A + E+A A PLS+ LDID+FKQ ND YGH Sbjct: 301 QRELEEKTHRDVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHA 360 Query: 193 RGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVAQRCRSLIAQAAI 252 GD+ L ++++++ T R D F RYGGEEFVL+ P + AL V R R A A+ Sbjct: 361 AGDKALIALSRIIA-TQIRGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIRQ--AVASY 417 Query: 253 PHAGSQVAPHITISQGVSTIVPSPMDQRI--DFLELADRRLYRAKQLGRNCI 302 H H+TIS G++ + M L AD LY AKQ GRN I Sbjct: 418 CHTYDTATFHLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGRNQI 469 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 571,968 Number of extensions: 22134 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 31 Length of query: 306 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 225 Effective length of database: 733,452 Effective search space: 165026700 Effective search space used: 165026700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)