BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2587.p (386 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 111 5e-26 gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 107 1e-24 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 81 1e-16 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 111 bits (278), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 107/378 (28%), Positives = 165/378 (43%), Gaps = 45/378 (11%) Query: 46 GELGFCGLYTPENEGGLGLSRLDATIVFEELARACTSTAAYLTIHNMVSWMVATWGQGEL 105 G G+ G+ P GG GL ++ AT E L A S A + + + T G Sbjct: 85 GAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAANLSFALCPLLTDGAIEALMTAGSEAQ 144 Query: 106 KEEWCAQLAAGHKIGSYCLTEPGSGSDAASLKTTA-RRVDDFYLINGSKAFISGAGSTDL 164 KE + AG G+ LTEP +GSD A +++ A + D Y I+G+K FI+ G D+ Sbjct: 145 KETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSRAVPQGDGTYKISGTKIFIT-YGEHDM 203 Query: 165 L-----VVMART--GGPGARGVSAIVVPG---DTPGISYGKK--------ESKMGWNSQP 206 +V+ART G +G+S VVP + G S G + E K+G + P Sbjct: 204 AENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADG-SLGARNDAYCVSIEHKLGIRASP 262 Query: 207 TRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQAALDAAHAYIKER 266 T + F + +G L+GEE G ++ R + + A+ A A +Y K+R Sbjct: 263 TAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFAVGIQGIAVAERAYQKAVSYAKDR 322 Query: 267 KQ--------FGRPIADFQALQFKLADMQTELVAARQMVRLAATKLDAGSPEATT----- 313 Q I ++ L M+ ++ AAR + + A D A Sbjct: 323 VQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAAAFDIAHHHADAEVRSS 382 Query: 314 -------YCAMAKRLATDLGFNICNEALQLHGGYGYIREYPLERYFRDVRVHQILEGTNE 366 + K AT++ ++ + LQ+HGG G+I E +Y+RD R+ I EGT Sbjct: 383 HQAFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTIYEGTTA 442 Query: 367 IMRVIISRNLLGRDTLDD 384 I + +L+GR T D Sbjct: 443 IQ----ANDLVGRKTARD 456 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 107/378 (28%), Positives = 162/378 (42%), Gaps = 50/378 (13%) Query: 49 GFCGLYTPENEGGLGLSRLDATIVFEELARACTSTAAYLTIHNMVSWMVATWGQGELKEE 108 G+ L GG GL + FE L + + Y + + + G E K Sbjct: 92 GWPSLSCDPEYGGQGLPMVLQNSFFEMLNSSNQAWTMYPGLSHGAYECLHEHGTAEQKAL 151 Query: 109 WCAQLAAGHKIGSYCLTEPGSGSDAASLKTTAR-RVDDFYLINGSKAFISGAGSTDLL-- 165 + +L +G G+ CLTE G+D L++ A + D Y I GSK FIS AG D++ Sbjct: 152 YLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKAEPQADGSYKITGSKIFIS-AGEHDMVQN 210 Query: 166 ---VVMART--GGPGARGVSAIVVPGDTPG----------ISYGKKESKMGWNSQPTRTI 210 +V+AR G G+S +VP P I G E KMG + T + Sbjct: 211 ILHLVLARLPDAPQGTHGISLFIVPKFLPNADGTLGARNPIFCGALEEKMGIHGNATCQM 270 Query: 211 SFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQAALDAAHAYIKERKQF- 269 + D G ++G+ +G ++ R+ + S+G + A A Y K+R Q Sbjct: 271 NIDGA---TGWMIGQPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALLYAKDRLQMR 327 Query: 270 ---GRPIADFQALQFKL-ADMQTELVAA-------RQMVRLAATKLDA------------ 306 G AD A + D++ L+ A R A ++D Sbjct: 328 SLTGVKAADKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDRELNHPDEAVRKD 387 Query: 307 GSPEATTYCAMAKRLATDLGFNICNEALQLHGGYGYIREYPLERYFRDVRVHQILEGTNE 366 + E + K TD G+ +EA+Q++GG+GYI E+ +E+Y RD R++ I EGTN Sbjct: 388 AADEVALLTPIIKAFLTDNGWIATSEAMQVYGGHGYIAEWGMEQYVRDARINMIYEGTNT 447 Query: 367 IMRVIISRNLLGRDTLDD 384 I S +LLGR L D Sbjct: 448 IQ----SLDLLGRKILLD 461 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 120/270 (44%), Gaps = 27/270 (10%) Query: 124 LTEPGSGSDAASLKTTARRVDDF-----YLINGSKAFISGAGSTDLLVVMARTGGPGARG 178 +TE GSD S T AR V Y + G K F S A D +V+ART G Sbjct: 182 MTEKQGGSDVRSNTTVARAVHGSGRGADYALTGHKWFFS-APMCDAHLVLARTEN----G 236 Query: 179 VSAIVVP-----GDTPGISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFA 233 +S VP G + + + K+G S + + F + G ++GEEG G Sbjct: 237 LSCFFVPRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEFQDA---YGVMVGEEGRGIPTI 293 Query: 234 MKGLDGGRINIATCSVGAAQAALDAAHAYIKERKQFGRPIADFQALQFKLADMQTELVAA 293 ++ + R++ S G + AL A + + R FG P+A+ ++ L+D+ E AA Sbjct: 294 IEMANHTRLDCVIGSAGLMRNALVQAIHHARHRSAFGHPLAEQPLMRNVLSDLALESEAA 353 Query: 294 R-QMVRL-AATKLDAGSPEATTYCAMAKRLATDLGFNICN-------EALQLHGGYGYIR 344 M+RL A +P+ A + L F +C E +++ GG GYI Sbjct: 354 TLLMLRLARAADASRDAPDDLLERAWRRILTPAAKFWVCKRVLEFSGECMEVWGGNGYIE 413 Query: 345 EYPLERYFRDVRVHQILEGTNEIMRVIISR 374 P+ R FR+ V+ I EG+ +M + + R Sbjct: 414 NAPMARMFREAPVNSIWEGSGNVMCLDVLR 443 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 705,803 Number of extensions: 28973 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 3 Length of query: 386 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 303 Effective length of database: 726,862 Effective search space: 220239186 Effective search space used: 220239186 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)