BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2579.p
         (467 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093347|ref|YP_001098422.1| putative iron-regulated membran...    94   2e-20

>gi|134093347|ref|YP_001098422.1| putative iron-regulated membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 455

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 198/467 (42%), Gaps = 61/467 (13%)

Query: 29  QAVLLRLHFYIGLFVGPFILVAALTGTLYVLTPQIESHLYAQQLYNRTSGVARPLADQVA 88
           +++  R+HF+  L   PF L+AALTG LY+ TPQIE  LYA   + +  G  R L   ++
Sbjct: 20  KSLFWRIHFWAALIASPFALLAALTGILYIFTPQIEQLLYADLDHVQPVGEMRTLDAAIS 79

Query: 89  AAQAFLGPDARLFAVRPARAAGWNTRVMF----SQSGLGDSESRA--------------- 129
           AA+  +  ++ L +V PA A   + RV F    + +    ++  A               
Sbjct: 80  AARLAVPAESSLRSVVPAFAPSDSVRVFFMLPDAHNAHASTDEHAAHRAAPAKTAAANRS 139

Query: 130 -----IFVDPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGSLGRNYSELAASWLWL 184
                ++V+P +  V G        G    +     LH  L+     R   ELAASWL +
Sbjct: 140 ARTAVVYVNPYTTAVLGMHTGNERFGAWSKK-----LHSTLLQSDSWRWLIELAASWLMV 194

Query: 185 GALGGVWLWWRGRRPQRALRVARPLNVRRL----HTLLGLWIVIGLVFFSATGLTWSRWA 240
             L G++LWW  R  ++ L   R  + R+     H  +G+ + +       TGLTWS++A
Sbjct: 195 MLLTGIYLWW-PRNSEKGL-PQRGASGRKAWAQWHGFIGVALSVMSFVILTTGLTWSKYA 252

Query: 241 GERVSQMRAQLGWITPSVSTQLQPGAPAMNMGEHADHMAAHGMSMSMPQVGDPARFDMVQ 300
           G++V   R  +G        Q  P AP        D +A             P  +    
Sbjct: 253 GDQVRLARDSIG--------QASPQAPRNLTSTIIDGIA-------------PMTWQAAA 291

Query: 301 HIARAGGIDAADIEIRPPRAADQAWVVREVDRSWPTQVDTVAIDADRMVITSRADFANFP 360
             AR    + A +++  PR     W V   D + P +   + +DA        +D+ N  
Sbjct: 292 DAARRQAPEIA-LQLIAPRDRLGTWRVSSYDPAQPKKRVDMMLDAYSGHALFYSDWKNQT 350

Query: 361 LVAKLVRWGVDAHMGVLFGVANQILMALFGFALSGLIVLGYLMWWRRRPAAGASLAPLME 420
             +K    G+  H G  FG  NQ+L+ +FG  +   ++ G++M+++RR      L  L+ 
Sbjct: 351 AFSKATGIGIPFHRGE-FGWWNQLLLLIFGLGIVFSLLSGWVMFFKRRKTGSLGLPKLLP 409

Query: 421 AVMRLPPLQRITLAVLALLLGWNLPLMGVSLLVFLLVDVIRYRRSLR 467
              +  P+     A    +    +PL+ +S      +++  + R+ +
Sbjct: 410 GAWKAMPVGGWICAACLFV---AMPLLAISSAALATIEIFLHYRNRK 453


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 766,276
Number of extensions: 28703
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 382
Effective length of database: 720,272
Effective search space: 275143904
Effective search space used: 275143904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)