BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2576.p
         (265 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095286|ref|YP_001100361.1| hypothetical protein HEAR2098 [...    59   2e-10

>gi|134095286|ref|YP_001100361.1| hypothetical protein HEAR2098
           [Herminiimonas arsenicoxydans]
          Length = 238

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 22/218 (10%)

Query: 43  LMAVVSTVLLFALIAYEVSTHGALTRLDQQLADWFNQHAFSPLTELVLGYTHLHGTIGVL 102
           L+  +  ++LF  +A ++  HG +   D       + HA   L    LG + +      L
Sbjct: 37  LLGFIFPLILFFALATDIG-HGKIYPFDHSFLLMLHAHATPFLDRWALGISAVISVFSFL 95

Query: 103 VMGLALLWHMLQQRRWAWVVDLLLVLPGGMLCNFILKHLFARLRPSFDDPILVLHSYSFP 162
           V     L ++  +R W   +  LL + G  + NFI K++  R RP     +    ++SFP
Sbjct: 96  V-----LIYLCCRRLWHTALFWLLAVGGSSVLNFIAKNVIQRSRPDLWALVSPQSNFSFP 150

Query: 163 SGHTIGATLLYAMLAAYLLNQPSILAAIGARLKTGESGVRLSVIGVALLLVVLTGFSRVY 222
           SGHT  A  + A+    LL+    + AI   +                  V+L    R+Y
Sbjct: 151 SGHTTEAMAI-AVAMVVLLHASRYIRAIWMAVCA---------------FVLLVALCRMY 194

Query: 223 LGAHFLSDVLGAMLLGTAWFALWSTLVFTWQRHYYGLP 260
           LG H+LSD++G+ LL   W    S L   + R   G P
Sbjct: 195 LGLHYLSDIVGSCLLALTWVVGLSILFDVYGRTSQGSP 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 508,505
Number of extensions: 20350
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 185
Effective length of database: 736,747
Effective search space: 136298195
Effective search space used: 136298195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)