BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2575.p
         (226 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094845|ref|YP_001099920.1| aerobic, anaerobic respiration,...   326   8e-91
gi|134095514|ref|YP_001100589.1| aerobic, anaerobic respiration,...   278   2e-76

>gi|134094845|ref|YP_001099920.1| aerobic, anaerobic respiration,
           osmotic balance transcriptional regulator [Herminiimonas
           arsenicoxydans]
          Length = 251

 Score =  326 bits (835), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 187/226 (82%)

Query: 1   MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDESLYRLNDKFDMLYAIRLGHFKTFQGNPN 60
           MHQLCLPMGL + D+ +L+Q+I RRRKV RD  LYR++D F  LYA+R+GHFKT+Q N  
Sbjct: 26  MHQLCLPMGLGENDIDKLDQIIGRRRKVPRDGYLYRMDDPFTNLYAVRIGHFKTYQVNAG 85

Query: 61  GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFARLEDLFRDMPTLLRQFH 120
           G QQITGFQMAGELLGMDAI    H C+A+ALEDSEVCEIPF RLE+LF  MP LLR FH
Sbjct: 86  GEQQITGFQMAGELLGMDAISTDRHHCDAIALEDSEVCEIPFPRLEELFGSMPILLRHFH 145

Query: 121 RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYASRGYSSTRFQLRMTREEIGNYL 180
           RMMS EI+REQ VML LG+M A+Q+ AAFL+NL+SRY +RGYSST FQLRM+RE+IGNYL
Sbjct: 146 RMMSQEITREQSVMLLLGNMRAEQRFAAFLVNLASRYVARGYSSTSFQLRMSREDIGNYL 205

Query: 181 GLAVESVSRLLTNFKKTGVIEVSHRDVELCDLVALRAIALGNDPCA 226
           GL +ES+SRLL+ FKK G+++VS+R++EL DLV L+A+A G + C+
Sbjct: 206 GLTIESISRLLSKFKKQGLLKVSNREIELLDLVTLKAMAAGTETCS 251


>gi|134095514|ref|YP_001100589.1| aerobic, anaerobic respiration,
           osmotic balance transcriptional regulator [Herminiimonas
           arsenicoxydans]
          Length = 282

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 173/223 (77%), Gaps = 1/223 (0%)

Query: 1   MHQLCLPMGLDQGDMQRLEQVINRRRKVKRDESLYRLNDKFDMLYAIRLGHFKTFQGNPN 60
           M Q+CLP GL+Q DM+RL+Q+I  R+K+ +D  LYR+ DKF  LYA+R+GHFKT+Q N  
Sbjct: 26  MRQICLPAGLNQHDMRRLDQII-VRKKIAKDSYLYRIGDKFTALYAVRIGHFKTYQENFI 84

Query: 61  GGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFARLEDLFRDMPTLLRQFH 120
           G +QI GFQM+G+LLGMDAI    H C+AVAL+DSEVC IP++RLE LF ++P L+R FH
Sbjct: 85  GNRQINGFQMSGDLLGMDAISNLLHQCDAVALDDSEVCVIPYSRLEALFTELPILMRHFH 144

Query: 121 RMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYASRGYSSTRFQLRMTREEIGNYL 180
           R+MS EI  EQ +++ LG+M A+Q+ AAFL+NLS RYA+RGYS  RFQLRMTRE+IGNYL
Sbjct: 145 RIMSQEIIGEQNMIMILGNMYAEQRFAAFLINLSRRYATRGYSPIRFQLRMTREDIGNYL 204

Query: 181 GLAVESVSRLLTNFKKTGVIEVSHRDVELCDLVALRAIALGND 223
           GL +ES+SR++   +K  +IE+  RDVE+ DL AL  +A G D
Sbjct: 205 GLTMESISRMIAKLRKGRLIEIVQRDVEILDLTALNKLAAGID 247


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 398,862
Number of extensions: 15235
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 148
Effective length of database: 743,337
Effective search space: 110013876
Effective search space used: 110013876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)