BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2572.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094932|ref|YP_001100007.1| AraC family transcriptional reg...   145   2e-36
gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas ...    54   7e-09

>gi|134094932|ref|YP_001100007.1| AraC family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 366

 Score =  145 bits (366), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 25  YRLHVASAQGGAIVTSAGLPVLTQSLAELDQALAGAPLHTLVSPGGSQGDQFRLDPALVA 84
           Y + + S  GG I +SA + ++T  L+  +Q        TL+   G+      L+P ++ 
Sbjct: 55  YAISLLSLYGGVIKSSASVEIMTLPLSSHEQH----TFDTLIIASGTGNFAAYLEPGMIE 110

Query: 85  WIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTTHWDSVAQLQRRYPALQVDGEPIYIR 144
           W+++   + +RI +VC+G F +A AGLLD  R TTHW    +L   +P ++V+ +     
Sbjct: 111 WLQKAKNKVRRIGAVCTGVFVMAAAGLLDNRRATTHWVLQDKLIHEFPQIKVERDATMTE 170

Query: 145 QGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSAPLASQSAG 204
              I+T++ V    ++ L+ +E DLG + A   A  LV+  +R    +       ++ + 
Sbjct: 171 DDGIFTASDVGMASEMALSFLESDLGPSVAKRVADSLVVCQRRRDHPTTVRPVRVAEPSK 230

Query: 205 AGRFVELHAWIAGHLEADLRVENLARQVNMSPRTFARLYVAETGRTPARTVELMRLEAAR 264
             +  +   W A H+   + + + A  V+MS R F R +  ETG TP   +  +RLEA R
Sbjct: 231 NNKIQQASRWFAEHMAEPINILSAANFVSMSERNFQRQFKRETGWTPHEFLLHLRLEAVR 290

Query: 265 RALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYR 305
           + L ET LP+ +IA + G+   +++ ++F + L VSP +YR
Sbjct: 291 QQLTETDLPVDKIARRCGFLSGEHVSKLFRKHLSVSPCEYR 331


>gi|134093400|ref|YP_001098475.1| DNA glycosylase [Herminiimonas
           arsenicoxydans]
          Length = 500

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 222 DLRVENLARQVNMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQS 281
           D  +E LA +V +S R   R+ +   G TP    +  RL  A++ L+ETRLP+  +A  +
Sbjct: 108 DGDMERLAAEVGLSSRQLRRVLLQHFGVTPVELAQTQRLLFAKKLLQETRLPMSDVAYAA 167

Query: 282 GYGEEQNLRRVFLRQLGVSPGQYR---ERF 308
           G+G  +    +FL + G++P   R   E+F
Sbjct: 168 GFGSIRRFNALFLARYGMAPTSIRRAAEKF 197


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 600,292
Number of extensions: 24719
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)