BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2567.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093320|ref|YP_001098395.1| putative Pirin-related protein ...   160   6e-41
gi|134096425|ref|YP_001101500.1| hypothetical protein HEAR3272 [...   114   6e-27
gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453 [...    74   7e-15

>gi|134093320|ref|YP_001098395.1| putative Pirin-related protein
           [Herminiimonas arsenicoxydans]
          Length = 289

 Score =  160 bits (405), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/260 (39%), Positives = 144/260 (55%), Gaps = 18/260 (6%)

Query: 36  RRLDPFLMLDAFHSDE--PSDYLAGFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPG 93
           ++L PFL+LD     E   SD   G   HPHRGFETVT +  G + HRD+ G  G++ PG
Sbjct: 33  KQLSPFLLLDYAGPAEFPASDRPPGVGSHPHRGFETVTIVYKGEVAHRDSTGQGGVIGPG 92

Query: 94  GMQWMTAGRGLVHSELPE----QEDGLMSGFQLWVNLAAKDKMTTPGYQDIPAAGIPETS 149
            +QWMTAG G++H E       +  G +   QLWVNL A+DKMT PGYQ I ++ IP   
Sbjct: 93  DVQWMTAGAGILHEEFHSDAFTRSGGTLEMVQLWVNLPARDKMTPPGYQAIVSSDIPVVP 152

Query: 150 -PQPGVKVRVLAGSAFGVDGAIRRETTEPLYLDLHLEAGVTLDLPIAATHNAFLYVYEGR 208
            P     +RV+AG   G  GA    T   ++ DL L+ G   D  +    N+ L V  G 
Sbjct: 153 LPDDAGTLRVIAGDYEGHAGAAHTFTPMQVW-DLSLKQGSKSDFTLPDGWNSALIVLRGT 211

Query: 209 LAVGPQGSEARLAEAGRMALLSNVADAAGVTVRAEQASR--FLLIAGRPLNEPIAQWGPF 266
           + +    ++ R+A   +M LL    D++G  +R E  S    LL++G  + E I  +GPF
Sbjct: 212 VLI----NDERVAREAQMVLL----DSSGRKIRIEANSDAVVLLLSGEAIEEEIVGYGPF 263

Query: 267 VMNTREQVEEAIDDFRAGRF 286
           VMN++ ++ +AI DF +GRF
Sbjct: 264 VMNSQAEIAQAIADFNSGRF 283


>gi|134096425|ref|YP_001101500.1| hypothetical protein HEAR3272
           [Herminiimonas arsenicoxydans]
          Length = 305

 Score =  114 bits (284), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 27/278 (9%)

Query: 21  GAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAG----FPDHPHRGFETVTYMLAG 76
           G    + R L    +R + PF+ LD      P  ++AG       HPH G  TVTY+  G
Sbjct: 20  GDNFEVRRALPTAQKRMVGPFVFLDQMG---PHAFVAGRGLDVRPHPHIGLATVTYLYDG 76

Query: 77  RMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELP----EQEDGLMSGFQLWVNLAAKDKM 132
            + HRD+ G+   ++PG + WMTAG G+VHSE            + G Q WV L  K + 
Sbjct: 77  EIVHRDSLGSLQTIQPGAVNWMTAGSGIVHSERTGAALRANGSSLYGLQCWVALPKKYEE 136

Query: 133 TTPGYQDIPAAGIPETSPQPGVKVRVLAGSAFGVDGAIRRETTEPLYLDLHLEAGVTLDL 192
             P ++   A  +P      G   +++AGS FG    +    ++  Y+D+ L+AG  LD+
Sbjct: 137 VAPAFEHTAADQLPVIEGD-GATAKIIAGSFFGKKSPV-ATLSDLFYVDVQLQAGARLDI 194

Query: 193 PIAATHNAFLYVYEGRLAVGPQGSEARLAEAGRMALLSNVADAAGVTVRAEQA----SRF 248
           P      A +YV EG+L +G  G    +  AG++ +L      A  TV    A    ++ 
Sbjct: 195 PAEYPEQA-MYVIEGQLDLGRDG----MFNAGQLLVLK-----ANTTVTLRGAGPGITKL 244

Query: 249 LLIAGRPLNEPIAQWGPFVMNTREQVEEAIDDFRAGRF 286
           +L+ G P++        FV ++ E++E+A +D++  RF
Sbjct: 245 MLLGGEPMDGSRYLSWNFVSSSVERLEQAREDWQQRRF 282


>gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 73.9 bits (180), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 58  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLM 117
           GF  H HR  E ++Y+L G + H+D+ G   ++ PG +Q M+AG G+ HSE    +D   
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGTGSVIRPGDVQRMSAGTGVRHSEFNHAKDQTT 112

Query: 118 SGFQLWVNLAAKDKMTTPGYQDIPAAGIPE--TSPQPGVKVRVLAGSAFGVDGAIRRETT 175
              Q+W+          P    IP +   +  ++ +   ++R++A S+ G DG++     
Sbjct: 113 HFLQIWIQ---------PNVNGIPPSYEEKNFSAEEKRGRLRLIA-SSDGADGSVLIHQD 162

Query: 176 EPLYLDLHLEAGVTLDLPIAATHNAFLYVYEGRLAVGPQGSEARLAEAGRMALLSNV 232
             LY  L  +   T  LPIA    A+++V  G  AV   G E +  +A +++ ++ V
Sbjct: 163 AKLYAGL-FDGAETASLPIAVGRLAYVHVARG--AVTVNGVELKTGDAVKLSDVTTV 216


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 607,370
Number of extensions: 27118
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)