BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2566.p (292 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096425|ref|YP_001101500.1| hypothetical protein HEAR3272 [... 267 5e-73 gi|134093320|ref|YP_001098395.1| putative Pirin-related protein ... 109 1e-25 gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453 [... 59 4e-10 >gi|134096425|ref|YP_001101500.1| hypothetical protein HEAR3272 [Herminiimonas arsenicoxydans] Length = 305 Score = 267 bits (682), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 145/285 (50%), Positives = 181/285 (63%), Gaps = 11/285 (3%) Query: 12 TRDIG--FPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHIGLATVTYLF 69 TRD+G F VRR LP A R VGPFVF D MGP F AG DVRPHPHIGLATVTYL+ Sbjct: 16 TRDLGDNFEVRRALPTAQKRMVGPFVFLDQMGPHAFVAGRGL-DVRPHPHIGLATVTYLY 74 Query: 70 SGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPAEQ 129 G ++HRDSLG +Q I PGAVNWM AG GIVHSER +R ++GLQ WVALP + Sbjct: 75 DGEIVHRDSLGSLQTIQPGAVNWMTAGSGIVHSERTGAALRANGSSLYGLQCWVALPKKY 134 Query: 130 EEGEPLFRHYAAQEMPETTVGGARLHVLAGSAFGVSSPVITASPTLYVAGSTTDGAELEI 189 EE P F H AA ++P GA ++AGS FG SPV T S YV GA L+I Sbjct: 135 EEVAPAFEHTAADQLPVIEGDGATAKIIAGSFFGKKSPVATLSDLFYVDVQLQAGARLDI 194 Query: 190 AAEVQERALYVVRGDVTL--DGERLEAGTLAILQPGASVAFKAVGESV--FMILGGAPLD 245 AE E+A+YV+ G + L DG AG L +L+ +V + G + M+LGG P+D Sbjct: 195 PAEYPEQAMYVIEGQLDLGRDG-MFNAGQLLVLKANTTVTLRGAGPGITKLMLLGGEPMD 253 Query: 246 GPRFVWWNFVATSRDKIEAAKEAWNSRNKQVFPDIPGETEWIPLP 290 G R++ WNFV++S +++E A+E W R F D+PGETE+IP+P Sbjct: 254 GSRYLSWNFVSSSVERLEQAREDWQQRR---FADVPGETEFIPMP 295 >gi|134093320|ref|YP_001098395.1| putative Pirin-related protein [Herminiimonas arsenicoxydans] Length = 289 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 9/274 (3%) Query: 16 GFPVRRLLPAAA-ARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHIGLATVTYLFSGAMM 74 GFPVR + + + + PF+ D+ GP EF A V HPH G TVT ++ G + Sbjct: 19 GFPVRSMFSYQSHGKQLSPFLLLDYAGPAEFPASDRPPGVGSHPHRGFETVTIVYKGEVA 78 Query: 75 HRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPAEQEEGEP 134 HRDS G I PG V WM AG GI+H E D + +Q+WV LPA + P Sbjct: 79 HRDSTGQGGVIGPGDVQWMTAGAGILHEEFHSDAFTRSGGTLEMVQLWVNLPARDKMTPP 138 Query: 135 LFRHYAAQEMPETTV--GGARLHVLAGSAFGVSSPVITASPTLYVAGSTTDGAELEIAA- 191 ++ + ++P + L V+AG G + T +P S G++ + Sbjct: 139 GYQAIVSSDIPVVPLPDDAGTLRVIAGDYEGHAGAAHTFTPMQVWDLSLKQGSKSDFTLP 198 Query: 192 EVQERALYVVRGDVTLDGERL--EAGTLAILQPGASVAFKAVGESVFMILGGAPLDGPRF 249 + AL V+RG V ++ ER+ EA + + G + +A ++V ++L G ++ Sbjct: 199 DGWNSALIVLRGTVLINDERVAREAQMVLLDSSGRKIRIEANSDAVVLLLSGEAIEEEIV 258 Query: 250 VWWNFVATSRDKIEAAKEAWNSRNKQVFPDIPGE 283 + FV S+ +I A +NS F IP + Sbjct: 259 GYGPFVMNSQAEIAQAIADFNSGR---FAQIPAQ 289 >gi|134093723|ref|YP_001098798.1| hypothetical protein HEAR0453 [Herminiimonas arsenicoxydans] Length = 233 Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 24/177 (13%) Query: 57 HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116 H H + ++Y+ G + H+DS+G I PG V M+AG G+ HSE + ++Q Sbjct: 57 HGHRDMEIISYVLEGELAHKDSMGTGSVIRPGDVQRMSAGTGVRHSE--FNHAKDQ--TT 112 Query: 117 HGLQMWV-----ALPAEQEEGEPLFRHYAAQEMPETTVGGARLHVLAGSAFGVSSPVITA 171 H LQ+W+ +P EE ++++A+E RL ++A S S +I Sbjct: 113 HFLQIWIQPNVNGIPPSYEE-----KNFSAEEKR------GRLRLIASSDGADGSVLIHQ 161 Query: 172 SPTLYVAGSTTDGAELEIAAEVQERALY--VVRGDVTLDGERLEAGTLAILQPGASV 226 LY DGAE R Y V RG VT++G L+ G L +V Sbjct: 162 DAKLYAG--LFDGAETASLPIAVGRLAYVHVARGAVTVNGVELKTGDAVKLSDVTTV 216 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 619,590 Number of extensions: 26793 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 3 Length of query: 292 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 211 Effective length of database: 733,452 Effective search space: 154758372 Effective search space used: 154758372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)