BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2562.p (465 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 128 6e-31 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 126 2e-30 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 109 3e-25 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 78 1e-15 gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimon... 77 2e-15 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 120/421 (28%), Positives = 196/421 (46%), Gaps = 21/421 (4%) Query: 34 LIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDV-PLAALSML-GTGDHAIY 91 ++ + + A YD L A ++ + ++ GE+ D+ P A ++L D Y Sbjct: 13 IVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAERTLLLDKEDQVYY 72 Query: 92 VVFDPRGRVIAGDAEFRPEIPWSEL---EQGPLLRDGQYLGTPVRMAIIGRRMPVNSPHP 148 + G +IAGD P +P + + DG G VR+A++ R P+ P Sbjct: 73 AIRTMDGNLIAGD----PTLPVQTVIKSGKDTAYYDGVLQGQSVRVALL-RGQPLLHPAT 127 Query: 149 WAVIV-LAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRE 207 V++ +A+T R ++L + ++ V + ++ + + LAPL++++ + Sbjct: 128 EPVMIQVAETQVKRNRHERALLIQLILPQVLLILIAGILIWRGVAHGLAPLRKLQQEVGM 187 Query: 208 RDLNDLSPLSL-TVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQ 266 R DLSP++ VP E LV A+N M R++ R I D AHQLRTPV L A Sbjct: 188 RSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIADTAHQLRTPVAGLKAH 247 Query: 267 MELLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDSSLQAPIDLGELVRS 326 +EL E++ + +R L L L LV+QL++ A + N + AP DL +L Sbjct: 248 IELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQLALR 307 Query: 327 QMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQYGAP-GLLQVRLD 385 E + + DL D P L+ G+ + E I N++DNA++Y P G + V + Sbjct: 308 AAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNLVDNAIRYTPPGGRVTVHVR 367 Query: 386 SDGQRHQLRFIDDGPGIAAKD----WERLRKPFAPRSENRMGASLGLSIVEEVMRAHGAE 441 D H L DDG I ++ +ER + E G+ LGL+IV E+ H A Sbjct: 368 QDEHAH-LIVSDDGARIPVEERTRIFERFHRLLGSHEE---GSGLGLAIVHEIATLHNAT 423 Query: 442 M 442 + Sbjct: 424 I 424 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 117/438 (26%), Positives = 193/438 (44%), Gaps = 31/438 (7%) Query: 35 IAI-WISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALSMLGTGD--HAIY 91 IAI ++ + A + +DR L +A+ +G+V + A+ +L D + Y Sbjct: 53 IAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGQVVTRLTGPAIDILHADDIDNIYY 112 Query: 92 VVFDPRGRVIAGDAEFRPEIPWSELEQGPLLRDGQY---LGTPVRMAIIGRRMPVNSPHP 148 + D + GD E +P E P +Y T VR+A I + P Sbjct: 113 QIRDAHDTFVEGDPEM--PLPKDAEESAPWSTKFRYDFIHNTEVRIAYIYVDLHKTQVEP 170 Query: 149 -------WAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRI 201 A++ + +T + R + ++ + + L+ F L + L PL + Sbjct: 171 QLSIEPRMALVQVGETLDKRSQLVNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAEL 230 Query: 202 EAAIRERDLNDLSPL-SLTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPV 260 + IR R +DLSP+ S VP E LV ++N ++RL +R I DAAHQ++TP+ Sbjct: 231 QQRIRARRPDDLSPIDSGHVPEEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPL 290 Query: 261 TALVAQMELLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDSSLQAP--- 317 + Q EL +++ + + L L + + + +VNQL+ A+ + N + P Sbjct: 291 AGMRMQSELALRQTDHAEIHKSLEQLAKSSKSATRMVNQLL--ALARAENQTPQTKPMQV 348 Query: 318 IDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQY--- 374 ++L EL R + + DL + P + RGD L E + N++DNAL Y Sbjct: 349 LELSELARDTVQNWVQTSFNRKIDLGFEQPDEAVMARGDATMLHELLNNLIDNALSYTPA 408 Query: 375 GAPGLLQVRLDSDGQRHQLRFIDDGPGIAAKD----WERLRKPFAPRSENRMGASLGLSI 430 G ++VR D L D+GPGIA + +ER + E G+ LGL+I Sbjct: 409 GGNATVRVRTDQQAGLAFLEVEDNGPGIAPHERSHIFERFYRILGSNVE---GSGLGLAI 465 Query: 431 VEEVMRAHGAEMRFAYLP 448 V E+ H AE+ P Sbjct: 466 VREIALQHNAEIEILNNP 483 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 10/319 (3%) Query: 151 VIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRERDL 210 +I +AQ R A S+ ++L+ + M + + + ++L PL + AI R Sbjct: 86 IIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSS 145 Query: 211 NDLSPL-SLTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQMEL 269 N L PL P E +++A+N + RL+ T R + DAAH+LRTP+TAL Q++L Sbjct: 146 NALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQL 205 Query: 270 LANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDSSLQAPIDLGELVRSQMT 329 + E+++ +R L ER LV QL+ A ++R IDL +L ++ Sbjct: 206 VERENDDRQRATGFRKLHERLNRATHLVQQLLTLARHEYRIADRSSQKIDLRQLTARVVS 265 Query: 330 EVLSNRSRTPHDLAL----DVPSLPCLIRGDTIALGEAIKNILDNALQYG-APGLLQVRL 384 + DL + D S +I G+ +L + N++DNA++Y + G + V + Sbjct: 266 DYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTV 325 Query: 385 DSDGQRHQ--LRFIDDGPGIAAKDWERLRKPFAPRS-ENRMGASLGLSIVEEVMRAHGAE 441 ++ H LR D+GPGI +D ER+ F R G+ LGL I + + H A Sbjct: 326 NTSTADHTVLLRVKDNGPGIPVQDQERVFDRFYRRDGTGESGSGLGLFIAKTIATQHEAT 385 Query: 442 MRFAYL-PNGYFSVVLDFP 459 + + G V + FP Sbjct: 386 IELSTADSKGGLIVTVRFP 404 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 150/338 (44%), Gaps = 21/338 (6%) Query: 134 MAIIGRRMPVNSPHPWAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQ 193 M I + P + H ++ +A + + F + ++++ LV A F + Sbjct: 143 MTINNSKSPTLNGH---IVAVAMDIDFHLDFLDMFKRILWWATLIVALIALVVAWFAVQW 199 Query: 194 ALAPLKRIEA---AIRERDLN-DLSPLSLTVPAETHALVSAINAFMQRLEVHRATMRRVI 249 P++++ AIR L+ LSP VP E L + N + R+E A + Sbjct: 200 GHRPIRKVSREIRAIRSSQLDVRLSPTD--VPIELAELAVSFNDMLGRIEDGFAKLANFS 257 Query: 250 GDAAHQLRTPVTALVAQMEL-LANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQH 308 D AH+LRTPVT L Q ++ L+ + D+ + L E L ++ ++ A ++ Sbjct: 258 ADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSNLEEFDRLSLMIGDMLFLAQTEN 317 Query: 309 RNDSSLQAPIDLGELVRS--QMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKN 366 + D+ LV+ EVL+ + L+ V I D + A+ N Sbjct: 318 DPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSGQVKP----IIADRDMMLRALSN 373 Query: 367 ILDNALQYGAPG-LLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPF---APRSENRM 422 +L NA++Y PG + VRL D +R + + G IA D +L F P + + Sbjct: 374 LLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAEDDLPKLFDRFFRVDPSRQRKS 433 Query: 423 GASLGLSIVEEVMRAHGAEMRFAYLPNGYFSVVLDFPA 460 GA LGL+IV+ ++ AH +++ A NG +++ P+ Sbjct: 434 GAGLGLAIVKSIIEAHDGKVQ-ATSRNGLIKFLIELPS 470 >gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimonas arsenicoxydans] Length = 533 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 19/239 (7%) Query: 228 VSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQMELLANESNEDKRQRHLALLR 287 V+ I Q+L++ A+M R+ AH++R P++A+ LL+ E RQR L ++ Sbjct: 298 VTEIENRAQQLKL--ASMGRLTASIAHEVRNPLSAIGHAASLLSEEELNASRQRLLTIIS 355 Query: 288 ERTGNLGALVNQLINHAMVQHRNDSSLQAPIDLGELVRSQMTEVLSNRSRTPHDLALDVP 347 E L N++I + R P+ LG L + E+ + +A+ Sbjct: 356 ENVARL----NRMIEDILKLSRKAHQYHEPLCLGLLFDDVLAELHEMHAVQEGMIAIGDM 411 Query: 348 SLPCLIRGDTIALGEAIKNILDNALQY--GAPGLLQVRLDSD-GQRHQLRFIDDGPGIAA 404 + P +R D + L E + N+L NAL+Y GAPG ++ + G R +L DDGP I + Sbjct: 412 A-PHKVRFDPLHLREIVLNLLTNALRYASGAPGSIRAYIAPGVGHRLELHVQDDGPQITS 470 Query: 405 KDWERLRKPFAPRSENRMGASLGLSIVEEVMRAHGAEMRFAY-------LPNGYFSVVL 456 L +PF S G LGL + E+ +GA + + Y LP G F + Sbjct: 471 AVRAHLFEPFYTTSSK--GTGLGLYLARELCLNNGAMLNYEYRTDDEKNLPAGRFVITF 527 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 861,711 Number of extensions: 35442 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 14 Length of query: 465 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 380 Effective length of database: 720,272 Effective search space: 273703360 Effective search space used: 273703360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)