BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2561.p (240 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 175 2e-45 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 171 2e-44 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 142 2e-35 gi|134093856|ref|YP_001098931.1| two-component system response r... 141 3e-35 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 137 6e-34 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 175 bits (443), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 137/232 (59%), Gaps = 1/232 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 MRILL ED + +A+ + L + G+ + +G A L + FDLLILD+ LP G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +LQ+LRAR PVL+LTA IE+RV+ LDLGADD++ KPF ELEAR+R L RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ L D+ R A ++ Q +EL+ RE+ LLE++ R GR+ +K++L+D L Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQLVLQQAAAEVALVAP 231 + + N +E YV RLRKK+ G I T+RGLGY L A L P Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEKFAEATPTTLTPP 232 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 171 bits (434), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRL-GEAFDLLILDVMLPHTDGF 59 MRIL+VED A +A A+ LT+ G+ V++ +G A+ L +A+ L++LD+ LP DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L++LR R PVL+LTA +++RV LDLGADDY+ KPFD E EAR+R L+RR Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 ++ L L D ++ + P+EL+ RE+ + E++ +R G++ K++++DRLF Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 D +N +E YV R+RKKL IRT+RG+GY L Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLL 218 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 117/182 (64%), Gaps = 5/182 (2%) Query: 40 LGEAFDLLILDVMLPHTDGFGLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLV 99 + E +DL++LDVMLP DG+ +++ LR G+ PVL LTA G +++RV+ L+LGADDYL+ Sbjct: 21 MNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLI 80 Query: 100 KPFDFRELEARIRVLLRRSGGES-TNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLE 158 KPF F EL AR+R LLRR S + L A+L +D R AT GQ I LT +E +LLE Sbjct: 81 KPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLE 140 Query: 159 IIAARPGRIFNKDELMDRLFTVDDTPNANTVEQYVARLRKKLAGAGFE---IRTLRGLGY 215 ++A R G + + + +++ ++ ++N ++ + RLR K+ FE I T+RG+GY Sbjct: 141 LLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAKIDDP-FEPKLIHTVRGMGY 199 Query: 216 QL 217 L Sbjct: 200 TL 201 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 7/221 (3%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHA-SGRLGEAFDLLILDVMLPHTDGF 59 MRIL++ED + + +V L G TV +G EA DL++LD+MLP G+ Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 60 GLLQQLRARG--QHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRR 117 LL LR++ QH PV+ LTA GE+E+RV+ L+LGADDYL+KPF F EL ARIR LLRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 118 SGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRL 177 S + + ++ ID R +G+ I LT +E LL ++A R + ++ + ++ Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 178 FTVDDTPNANTVEQYVARLRKKLAGAGFE---IRTLRGLGY 215 + ++ + N ++ V RLR K+ FE I T RG+GY Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDP-FETKLIHTQRGMGY 220 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 137 bits (344), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHG--AHASGRLGEAFDLLILDVMLPHTDG 58 M++L+VED E + L G V++ ++G H G +DL+ILDVMLP DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGN-YDLIILDVMLPDIDG 59 Query: 59 FGLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRS 118 + +LQ LR G + P L LTA + +RV+ L+LGADDY+VKPF F EL AR+R LLRR Sbjct: 60 WKILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRG 119 Query: 119 -GGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRL 177 + + ++L +D R AT G+ + LT +E LLE + G + + + ++ Sbjct: 120 IPSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQI 179 Query: 178 FTVDDTPNANTVEQYVARLRKKLAGAGFE---IRTLRGLGYQL 217 + ++ + N ++ + RLR K+ +E I T+RG+GY L Sbjct: 180 WDINFNSDTNVIDVAIRRLRSKM-DDDYEPKLISTIRGVGYVL 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 423,896 Number of extensions: 17069 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 22 Length of query: 240 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 161 Effective length of database: 740,042 Effective search space: 119146762 Effective search space used: 119146762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)