BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2560.p (263 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 349 1e-97 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 175 2e-45 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 169 1e-43 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 134 4e-33 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 128 2e-31 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 349 bits (895), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 167/247 (67%), Positives = 197/247 (79%), Gaps = 1/247 (0%) Query: 15 RPLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPT 74 +PLL++ VTLQYKT + LVTAT V F V+ DR++LLGPSGCGKSTLLKA+GGY+ PT Sbjct: 6 QPLLDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPT 65 Query: 75 SGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYY 134 G +RL + + +P DRMMVFQEFDQL PWKTV+QNV F L ASG+L G+ A ++A YY Sbjct: 66 EGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYY 125 Query: 135 IGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELL 194 I KV L+KF D YPHMLSGGMKQRV+IARGMAMEPD+LLMDEP+AALDALTR+KMQDELL Sbjct: 126 IEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELL 185 Query: 195 RLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDPSQLGTAAQAELETR 254 +LWDDT FTVLFVTHSI EA+++G RILLL+PHPGQV AELNS + L + Sbjct: 186 QLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPGQVTAELNSTGEDTIDADGNC-LTEK 244 Query: 255 INDMLFA 261 IN MLFA Sbjct: 245 INKMLFA 251 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 140/223 (62%), Gaps = 6/223 (2%) Query: 17 LLEIDRVTLQYKTSDSL-VTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 L+E+ V +KT+D + ++V+F + G+ LLG SG GKSTLL+ + G + Sbjct: 6 LIELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQ 65 Query: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYI 135 G + +G+E++ P MVFQ F L PW TV+QNVE L A G + +RA+ + Sbjct: 66 GTAKYRGQEIYSPVSGIAMVFQSF-ALFPWLTVQQNVELGLEAQG-MAPDEREKRADAML 123 Query: 136 GKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 +GLA F + P LSGGMKQRV IARG+ PDVLLMDE F+ALD LT ++D++L Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 196 LWDDTQF---TVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 +W++ + +L V+H+IEEA+ + RIL+L+ PG++R+E+ Sbjct: 184 MWEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEI 226 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 17 LLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSG 76 ++I + + T + A ++ V G+ L+G SGCGKSTLL I G Q T G Sbjct: 8 FIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGG 67 Query: 77 AIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALH-ASGRLHGRAAAE-RAEYY 134 + RE+ P P+R +VFQ LLPW T +NV A+ G++ G+A R Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHS-LLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAA 126 Query: 135 IGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELL 194 + VGL P+ +SGGMKQRV IAR ++MEP VLLMDEPF ALDALTR +QDELL Sbjct: 127 LSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELL 186 Query: 195 RLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 ++ T TV+ VTH ++EA+ + +I++LT P E+ Sbjct: 187 KIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEI 227 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 9/212 (4%) Query: 17 LLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSG 76 LLEI +T ++ + T ++S ++ G+ + LLGPSGCGK+TLL+ I G+ +P +G Sbjct: 3 LLEIRNLTRRFGDN----TVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAG 58 Query: 77 AIRLKGREVHEPGPDRMMV---FQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEY 133 I L G ++ P++ +V FQ + L P TV N+ F L + ++ + Sbjct: 59 KILLDGVDLTGVPPEQRVVRTVFQNY-ALFPHMTVAGNIAFPLEMANTPKSEIK-QKVDE 116 Query: 134 YIGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDEL 193 + V L F YPH LSGG +QRVSIAR + P +LL+DEP +ALDA R +MQ EL Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 194 LRLWDDTQFTVLFVTHSIEEAIRVGTRILLLT 225 + L + T ++VTH EA+ + RI ++ Sbjct: 177 INLQKEVGITFVYVTHDQAEALALSHRIAVMN 208 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 107/197 (54%), Gaps = 7/197 (3%) Query: 35 TATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSGAIRLKGREV---HEPGPD 91 A VS G+ LLGPSGCGK+TLL+ I G QP G + L G + H Sbjct: 16 VALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRERQ 75 Query: 92 RMMVFQEFDQLLPWKTVRQNVEFALH---ASGRLHGRAAAERAEYYIGKVGLAKFIDSYP 148 VFQ + L TV +N+ F L A+ R E+ + V L D YP Sbjct: 76 VGFVFQHY-ALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLDWLADRYP 134 Query: 149 HMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRLWDDTQFTVLFVT 208 LSGG +QR+++AR +A+EP VLL+DEPF ALDA R++++ L RL D+ T +FVT Sbjct: 135 PQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVT 194 Query: 209 HSIEEAIRVGTRILLLT 225 H EEA+ V +I+L+ Sbjct: 195 HDQEEALEVADQIVLMN 211 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 503,258 Number of extensions: 20144 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 44 Length of query: 263 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 183 Effective length of database: 736,747 Effective search space: 134824701 Effective search space used: 134824701 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)