BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2559.p
         (289 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...   337   6e-94
gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    62   4e-11

>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score =  337 bits (863), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 182/282 (64%), Positives = 223/282 (79%), Gaps = 1/282 (0%)

Query: 9   RPEILVDPNPHAT-AEVQRPLSAFESLYRLGWLRKTVILLVLAAIWEVYGRWLDNALLFP 67
           RPE   +  P      VQ+PL+++E L+     RK  IL++LA IWEVY R L+N LLFP
Sbjct: 27  RPEYYANRAPSTEFGVVQKPLTSWEKLHNNSGARKIGILVLLAVIWEVYARMLNNTLLFP 86

Query: 68  SFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETL 127
           +FS  V+A + G+ SG LL +   S++ LL+GYG G++LA LLT  AI+SRIG D LETL
Sbjct: 87  TFSSVVEALVEGVISGGLLGKVWFSIKILLMGYGAGLVLAALLTVFAITSRIGRDFLETL 146

Query: 128 TSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQN 187
           TSMFNPLPAIALLPL+L+WFGLGTGS++FVL+HSV+WAVALNTH GF++VS TLRMVG N
Sbjct: 147 TSMFNPLPAIALLPLSLLWFGLGTGSLVFVLIHSVVWAVALNTHSGFQSVSTTLRMVGHN 206

Query: 188 YGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENR 247
           YGL     V  ILIPAAFPSILTGLK+GWAFAWRTLIAAELVFGVSSG+GGLGW+I+EN+
Sbjct: 207 YGLSGLRYVFQILIPAAFPSILTGLKIGWAFAWRTLIAAELVFGVSSGSGGLGWFIYENK 266

Query: 248 NQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289
           NQLE  +VF+GL  VI+IGL VEN IF  IE+ T+++WGMQ+
Sbjct: 267 NQLEIPSVFAGLLTVIMIGLFVENFIFRTIEQCTVQKWGMQN 308


>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 62.0 bits (149), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 79  GIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETLTSMFNPLPAIA 138
           GIG  +L      S++ + VG+GL  L+   L  +    +  + +   + S+  P+  +A
Sbjct: 105 GIGWNIL-----ASLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLA 159

Query: 139 LLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQNYGLRRFSLVKS 198
            LP+ L+ F     + I+ +    +W + +NT  G + V      V +   L  + +V  
Sbjct: 160 WLPIGLLVFKAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTK 219

Query: 199 ILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENRNQLE 251
           IL P+  P +LTG+++    AW  ++AAE++    +G  G+G+++++  N L 
Sbjct: 220 ILFPSVLPYMLTGVRLAIGTAWLVIVAAEML----TGGVGIGFWVWDEWNNLN 268


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 486,836
Number of extensions: 18117
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 208
Effective length of database: 733,452
Effective search space: 152558016
Effective search space used: 152558016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)