BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2558.p
         (338 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096478|ref|YP_001101553.1| putative ABC transporter peripl...   304   4e-84

>gi|134096478|ref|YP_001101553.1| putative ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 337

 Score =  304 bits (779), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/340 (45%), Positives = 214/340 (62%), Gaps = 5/340 (1%)

Query: 1   MKRRSFTSLMIASALALSGASGAARAEAQEVRISHGYGLLYLPLMVMRDQGLVEKHAKAM 60
           MK R+F+   +  +  L GA     AE  ++ I+  YG+ YLPLM+M +  L+EK AK  
Sbjct: 1   MKFRTFSLRALIGSCFLMGAIANVSAEVNKIGIAQQYGISYLPLMIMEENKLLEKAAKEA 60

Query: 61  GLGDVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALST 120
           GLGD+  +W    GGNV+NDA+L+G+L  A  G   F+TLW+K        V  + A+++
Sbjct: 61  GLGDITVQWAKFAGGNVMNDALLSGDLQFASGGLGPFITLWAKTKD--NIGVRAVAAMNS 118

Query: 121 SPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVS 180
            PL LNT NP++K+L+DFT KDKIA+P +K S+ A+ LQMAA K FG     +LD  TV+
Sbjct: 119 MPLLLNTRNPDIKTLQDFTEKDKIALPAVKVSIQAITLQMAAEKAFGSGQENRLDKFTVT 178

Query: 181 LSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLG--HITIDVVFALK 238
            SHP+ MA+++SG +EI +HFTSPPF Y E   PGI  V+NS +V G  H T +VV+A K
Sbjct: 179 QSHPDGMAAMLSGSSEINSHFTSPPFQYTELDRPGIHTVVNSYEVTGGPH-TFNVVWASK 237

Query: 239 SFTDKNPKLTQAVMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFS 298
            F D NPK   A + A + + A I K++K AAE ++R SK K   E +E+ML DP  EF+
Sbjct: 238 KFVDANPKTYAAFLKAFDSSIAMINKDKKAAAEFYIRASKSKESVESIEKMLNDPNIEFT 297

Query: 299 TTPVDIMQYVVFMSKAGTIKTKPAVWNEMFVPAFKERKGS 338
           TTP + M+Y  FM + G +K KPA W +MF P      GS
Sbjct: 298 TTPKNTMKYADFMYRIGMVKVKPASWKDMFFPNMYNLPGS 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 599,238
Number of extensions: 23836
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 256
Effective length of database: 730,157
Effective search space: 186920192
Effective search space used: 186920192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)