BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2547.p
         (742 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096614|ref|YP_001101689.1| isocitrate dehydrogenase [Hermi...   963   0.0  

>gi|134096614|ref|YP_001101689.1| isocitrate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 742

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/740 (63%), Positives = 561/740 (75%)

Query: 3   TGNPTIIYTLTDEAPYLATHSLLPIVKKFTAPAGIDVVESDISVAARILAEFPEFLTDEQ 62
           T N  IIYTLTDEAP LAT+SLLPIV+ FT  +GI V   DIS+AARILA FP+ L D+Q
Sbjct: 2   TINSKIIYTLTDEAPALATYSLLPIVEAFTRSSGIIVETRDISLAARILAAFPDVLDDKQ 61

Query: 63  KVPDNLAALGALTQDPNANIIKLPNISASILQLQAAIRELQARGYKLPDYPENPSTEEEK 122
           K+   LA LG L   P ANIIKLPNISASI QL+AAI+ELQ +GYKLP YP++  T+ E+
Sbjct: 62  KIAPALAELGELATTPEANIIKLPNISASIPQLKAAIKELQQQGYKLPAYPDDAQTDAER 121

Query: 123 ALQKRYAKITGSAVNPVLREGNSDRRAPNAVKNYARKHPHSMAKWSMASRTHVAHMHGGD 182
             + RY KI GSAVNPVLREGNSDRRAP +VKNYARKHPH M  WS  S++HVAHM GGD
Sbjct: 122 DAKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMDGGD 181

Query: 183 FYAGEKSLTLDKAVDVKMDLVTKSGETIVLKPKLSLQAGEIIDSMFMSKKALCAYYEEQM 242
           FY  EKS+ + +A +VK++L    G   VLK K ++QAGEIID+  +S+ AL  +   Q+
Sbjct: 182 FYGSEKSVLIAEAGNVKIELFAADGSKSVLKEKTAVQAGEIIDAAVLSRNALRTFLSAQI 241

Query: 243 QDAFETDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKHAKLFAEIGVNPNNGMSGV 302
            DA   ++L SVH+KATMMKVS PI+FG  V  YY++   K+A    + G +PNNG+  +
Sbjct: 242 ADAKAKNVLFSVHLKATMMKVSDPIIFGQVVAVYYEEVLNKYADALKQAGFDPNNGIGDL 301

Query: 303 YEKINTLPEDKKAEVLADLKADEAKRPRLAMVDSAKGITNLHAPNDVIVDASMPAMIRAG 362
           Y +I TLP D +A + AD++A  A+   LAMV+S KGITNLH P+DVIVDASMPAMIR  
Sbjct: 302 YARIKTLPADTQAAIKADIQALYARSAPLAMVNSDKGITNLHVPSDVIVDASMPAMIRDS 361

Query: 363 GKMWNAAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPTTMGTVPNVGLMAQKAEEY 422
           GKMWN AG+ +DTKA++P+  +A IYQ +I+ CK +G FDP TMG+VPNVGLMAQ AEEY
Sbjct: 362 GKMWNTAGELQDTKAVIPDRCYAGIYQVVIDDCKQHGPFDPVTMGSVPNVGLMAQAAEEY 421

Query: 423 GSHDKTFEIAQAGVARIVTLDGQVLLEQNVEEGDIWRMCQVKDAAVRDWVKLAVTRARLS 482
           GSHDKTF+IA  GV R+    G VL+EQ VE GD++RMCQ KDA ++DWVKLAV RAR +
Sbjct: 422 GSHDKTFQIAADGVVRVTDASGTVLIEQKVEAGDLFRMCQTKDAPIQDWVKLAVNRARAT 481

Query: 483 GMPAVFWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQVRAMRYTLERVIRGLDTIS 542
           G PAVFWLD  R H+A++I KVN YLKDHD  G D++I++ V A R+TLER+  G DTIS
Sbjct: 482 GTPAVFWLDAQRAHDAQIIAKVNVYLKDHDTAGLDLRILAPVDATRFTLERIRAGKDTIS 541

Query: 543 VTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVGENHLR 602
           VTGN+LRDYLTDLFPI+ELGTSAKMLSIVPLMAGGG+FETGAGGSAPKHVQQ V E+ LR
Sbjct: 542 VTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEEDFLR 601

Query: 603 WDSLGEFLALAVSIEEVGIKTGNNKAKILAKTLDAATGKLLDNNKSPSPKTGELDNRGSH 662
           WDSLGEF+ALA S+E +G    N KA +LAK LD ATGK LD NKSP+ K G LDNRGSH
Sbjct: 602 WDSLGEFMALAASLEHLGQVNKNVKALVLAKALDQATGKFLDTNKSPARKVGGLDNRGSH 661

Query: 663 FYLALYWAQELAAQKDDAELAKQFAPLAKALADNEQKIVEELNSVQGKQVDIGGYYLPDR 722
           FYLALYWAQ LA Q +DAEL   FA  AKALADNE  IV EL + QGK VDIGGYY PD 
Sbjct: 662 FYLALYWAQALAEQSEDAELQAHFAAPAKALADNEAAIVAELKAAQGKPVDIGGYYHPDT 721

Query: 723 EKTFAVMRPSATLNQALESV 742
            KT   MRPS TLNQ L+S+
Sbjct: 722 TKTSQAMRPSKTLNQVLDSI 741


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,359,156
Number of extensions: 54858
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 653
Effective length of database: 707,092
Effective search space: 461731076
Effective search space used: 461731076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)