BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2543.p
         (397 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...   228   3e-61

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score =  228 bits (582), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 162/403 (40%), Positives = 228/403 (56%), Gaps = 24/403 (5%)

Query: 1   MLTDAQLAIVKSTVPLLESGGEALTTHFYKLLMRDYPQVHPLFNRAHQASGDQPRALANG 60
           ML+      + ++VP+L   G A+T  FYK L   +PQ+H +FN  +QA+G Q ++LA+ 
Sbjct: 1   MLSAESRPYIDASVPVLREHGLAITQVFYKNLFESHPQLHHIFNAGNQANGSQQQSLASA 60

Query: 61  VLMYARHIDRLEELGPLAAQIINKHVAVQVMPEHYPMVGDCLLRAIREVLGAEIATDAVI 120
           V  YA +ID    L P+ ++I++KHV++ +   HYP+VG+ LL AI++VLG + AT A+I
Sbjct: 61  VFAYAANIDNQAALAPVISRIVHKHVSLGITAAHYPIVGEHLLGAIKQVLG-DAATPALI 119

Query: 121 DAWAAAYGQLADILIGAERQQYDAKAEAPGGWRGARNFVVTRKVAESEEITSFYFMPQDG 180
            AWA AYG LA  LI  E + Y A    PG     R   V +   ES ++TS+  +  D 
Sbjct: 120 AAWAEAYGLLAQALIDEENRLYQAAGVEPGDLFNMRVVAVEK---ESAQVTSYSMVAVD- 175

Query: 181 GALLDFEPGQYIGLRMVV-DGLEQRRQYSLS-APLRQAGQPLQYRISVKREASGK----- 233
             L +F+PGQY+ + + + DGL Q RQYSLS +P  Q       RISVKRE +G      
Sbjct: 176 RQLPEFQPGQYVSVAVFLPDGLRQLRQYSLSESPDHQ-----HLRISVKREVAGAETPAG 230

Query: 234 -VSRQLHDHIHVGSVVELFPPAGDFTLTANAK-PLALISGGVGITPMMTMLA--AALPSG 289
            VS  LHD++ VGS++ +  PAGDFT   + + P+ L+S GVGITPM++ L   A +   
Sbjct: 231 VVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDPIVLLSAGVGITPMISALNRIAKVSPR 290

Query: 290 RPVHFIHAARHAGVHAFRRELEQLAAQHPQLQLHFCYEQARAGDPAAHANGFIDPARLQQ 349
           R V F HAAR+A  H  R ++ +  A  P L     YE+A   D  + A G ++  +L Q
Sbjct: 291 RRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFYEEAEHDDETSLA-GRMELQKLPQ 349

Query: 350 WLPATRDIDAYFVGPKPFMKAIKHALAELGVPAAQSRYEFFGP 392
           W    +    Y  GP PFM+A    L   GVPA     E FGP
Sbjct: 350 W--DVKKSQVYMCGPLPFMQAQWADLLAQGVPAQHLHREVFGP 390


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 752,579
Number of extensions: 30102
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 313
Effective length of database: 723,567
Effective search space: 226476471
Effective search space used: 226476471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)