BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2532.p
         (252 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094853|ref|YP_001099928.1| hypothetical protein HEAR1646 [...   259   9e-71

>gi|134094853|ref|YP_001099928.1| hypothetical protein HEAR1646
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score =  259 bits (662), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 142/248 (57%), Positives = 186/248 (75%), Gaps = 5/248 (2%)

Query: 1   MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 60
           MPI YLRRL+   RT  +N+ LG  LAF+AGAVNAGGFLAV QYTSHM+G +SS ADNLV
Sbjct: 1   MPIAYLRRLSGRTRTRSANQQLGIFLAFVAGAVNAGGFLAVHQYTSHMTGFISSTADNLV 60

Query: 61  LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 120
           LG  LL++AG  +LLSFL GAA +A++INWAR R +H+EYA+ L +EA+LLL FG+LG+N
Sbjct: 61  LGNALLVLAGLGSLLSFLCGAATTAILINWARHRNMHAEYALSLAIEALLLLIFGLLGAN 120

Query: 121 LENHRLLFVPVTVALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWSLA 180
           L  +  L +P TV LLC++MGLQNA++SKIS +EIRTTHVTG++TD+GIE+GKM YW+ +
Sbjct: 121 LNAYTSLTLPATVILLCYIMGLQNAIVSKISNAEIRTTHVTGIITDLGIELGKMLYWNRS 180

Query: 181 PYQPGESSLSEDPVPGARRKFLLLASLLLMFFLGGVTGALGFKLVGFVATMPLAAALFLL 240
                    +   V   + K  +  ++LLMFF+GG+ GALGFK  GF+  +P A AL L 
Sbjct: 181 -----NDKTAIGHVHANKEKLKIHMAILLMFFIGGIIGALGFKHAGFMTVVPFACALLLT 235

Query: 241 ALVPMMDD 248
           AL+P++DD
Sbjct: 236 ALMPIIDD 243


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 351,096
Number of extensions: 10735
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 172
Effective length of database: 736,747
Effective search space: 126720484
Effective search space used: 126720484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)