BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2525.p (564 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094465|ref|YP_001099540.1| acetolactate synthase III large... 155 5e-39 gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Hermini... 143 3e-35 gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxyla... 89 8e-19 >gi|134094465|ref|YP_001099540.1| acetolactate synthase III large subunit [Herminiimonas arsenicoxydans] Length = 579 Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 144/560 (25%), Positives = 232/560 (41%), Gaps = 24/560 (4%) Query: 4 TVADILIDTLYQIGVRQIFGVVGDALNPFTDALRRDKRIEWIGVRHEEGAALAAAGQAKL 63 T A+I++ L + GV +FG G A+ DA+ + + I VRHE+ A AA ++ Sbjct: 14 TGAEIVVRCLAEEGVEHVFGYPGGAVLYIYDAIYNQDKFQHILVRHEQAAVHAADAYSRS 73 Query: 64 TGRLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDMLFRD 123 + ++ V T+GPG + V GL A D P++ ISG VP G D QE + R Sbjct: 74 SKKVGVSIVTSGPGVTNAVTGLATAYMDSIPMVIISGQVPTHGIGLDAFQECDTVGITRP 133 Query: 124 VAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPSIHTLRQRA 182 ++ +V A +A A R G ++IP D+ K + P +R Sbjct: 134 CVKHNFLVKDVRDLAATMKKAFYIATTGRPGPVLVDIPKDVSMHKCMFSYPKEVEMRSYK 193 Query: 183 ELAP-PTADIAAAAELINSASSVAIFAGNGC--RGAIEPVLALASKLQAPVMHTFRGKDL 239 + T I A +L+ A I+ G G A E + L KL P +T G Sbjct: 194 PVDKGHTGQIRKAVQLLLQAERPMIYTGGGVILANASEELTQLVDKLGFPCTNTLMGLGS 253 Query: 240 VAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPY------SEFLPTQSKVIQVDE 293 ++G G+ G A+ ++VM+ +G+ + F K+I +D Sbjct: 254 YRASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSSNPRKIIHIDI 313 Query: 294 RGFVLGRRAPVTLGITGSVGPTVQALLEQV---EGKTD----GSFLQQANAQRERWNAKL 346 + +R V + I G+V + LL Q+ E K + ++ +Q N R+R K Sbjct: 314 DPSSISKRVKVDIPIVGNVKEVLVELLAQLDAAEAKPNSVALSNWWKQINEWRKRDCLKF 373 Query: 347 DSAAEIKRHHKKIKPQSLARALSDLADDDAQFVIDTGVVTLWCGNWIRQRGQQRLLASFN 406 +++ + IKPQS+ + + D+ DA D G +W + +R + S Sbjct: 374 ENSTTV------IKPQSVIQKVWDVTKGDAFVTSDVGQHQMWAAQYYPFDKPRRWINSGG 427 Query: 407 NAAVGTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSVEHRLPVKVVVFNNREWG 466 +G L A G+Q + V G+ M + E T ++ L K+++ NNR G Sbjct: 428 LGTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLG 487 Query: 467 LV-HLEMEEAGMPAFEGSEFPNADFAAFARACGGQGFTARTPDELQDSLQQLLAASGPAV 525 +V + E G E DF A G G T P ++ +L++ A V Sbjct: 488 MVRQWQQLEYGSRYSESYMDSLPDFDKLVEAYGHVGMTIENPADVDGALKEAFAMKDRLV 547 Query: 526 LDVFIDPAELPVMPHIKMEQ 545 FI V P +K Q Sbjct: 548 FMNFITDQTENVWPMVKAGQ 567 >gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Herminiimonas arsenicoxydans] Length = 582 Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 141/578 (24%), Positives = 240/578 (41%), Gaps = 59/578 (10%) Query: 4 TVADILIDTLYQIGVRQIFGVVGDALNPFTDALRRDKRIEWIGVRHEEGAALAAAGQAKL 63 T A + + + G+ Q FGV G A+NPF A+++ I+ I RH EGA A G + Sbjct: 5 TAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTRA 64 Query: 64 T-GRLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDMLFR 122 G + V T+GPG ++ GLY A D P+L ++G P AR + Q + + + Sbjct: 65 KAGNIGVALATSGPGGTDMITGLYSAIADSIPILCVTGQAPRARLHKEDFQAVDIESISK 124 Query: 123 DVAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPSIHTLRQR 181 V +S +V P P VF QA + R G +++P D+ A++ P ++ Sbjct: 125 PVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFD-PDLYEPLPV 183 Query: 182 AELAPPTADIAAAAELINSASSVAIFAGNGCRGAIEPVL--ALASKLQAPVMHTFRGKDL 239 + A I A ++N A + +G G + L A + PV+ T G Sbjct: 184 YKPAASRKQIERAISMLNEAERPLLISGGGVINSDASALMQEFAELVNVPVVPTLMGWGT 243 Query: 240 VAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPYS-------------EFLPTQS 286 V DHP +G VGL H ML SD+ + + Sbjct: 244 VPDDHPLMVGMVGL-------QTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVFTKDR 296 Query: 287 KVIQVDERGFVLGRRAPVTLGITGSVGPTVQALLEQVEGKTDGSFLQQANAQRERWNAKL 346 K + +D +GR LGIT G ++ ++E + L+ A + R +A L Sbjct: 297 KFVHIDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKE------LKAAGKLKNR-DAWL 349 Query: 347 DSAAEIKRHHKK--------IKPQSLARALSDLADDDAQFVIDTGVVTLWCGNWIRQRGQ 398 E KR + IKPQ + + ++++ A++V + G+ + G ++ + Sbjct: 350 AECQERKRTMLRKTDFDVTPIKPQRVYQEMNEVFGKTARYVSNIGLSQIAAGQFLHVYKE 409 Query: 399 QRLLASFNNAAVGTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSVEHRLPVKVV 458 + + +G S+ A G++A D +++ GD F L+ E + LP V Sbjct: 410 RNWINCGQAGPLGWSVPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHV 469 Query: 459 VFNNREWGLVH-----LEMEEAGMPAFEG-SEFPNA----DFAAFARACGGQGFTARTPD 508 + NN GL+ M+ AF+ + NA D G + PD Sbjct: 470 LVNNSYLGLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGFGCKAIRVYNPD 529 Query: 509 ELQDSLQQLLAASGPAVLDVFIDPAELPVMPHIKMEQI 546 ++Q +L++ +I ++PV+ I +E++ Sbjct: 530 DIQPALRK---------AQEWIKEFKVPVVVEIILERV 558 >gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxylase [Herminiimonas arsenicoxydans] Length = 570 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 132/557 (23%), Positives = 227/557 (40%), Gaps = 58/557 (10%) Query: 8 ILIDTLYQIGVRQIFGVVGDALNPFTDALR--RDKRIEWIGVRHEEGAALAAAGQAKLTG 65 +L++ L G+ I+G++G P T+ R + + ++ R+E+ A AA+ LT Sbjct: 20 LLMEALEMNGITNIYGLLGI---PVTEIGRMWQARGNKFFSFRNEQNAGYAASVAGYLTK 76 Query: 66 RLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDM----LF 121 + +C + PG + + L A + P++ ISG + R D Q + +M + Sbjct: 77 KPGICVTVSAPGFLNGLTALANATTNCFPMILISGS--SEREVVDLQQGDYEEMDQLNIA 134 Query: 122 RDVAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPSIHTLRQ 180 R S + E +AI A + R G +L+IPA + +S+ +L Sbjct: 135 RPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAE-EGKKSLFV 193 Query: 181 RAELAP---PTAD-IAAAAELINSASSVAIFAGNG-----CRGAIEPVLALASKLQAPVM 231 + AP P D +A A LI A I G G C I+ AL + P Sbjct: 194 PVDPAPAQIPGPDAVARAVALIKGAKKPLILLGKGAAYAQCDADIK---ALIEETGIPFT 250 Query: 232 HTFRGKDLVAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPY------SEFLPTQ 285 K LV+ HP A + L ++V++++G+ + + Sbjct: 251 PMSMAKGLVSDIHPQ-------CAAAARSMVLQESDVVVLIGARLNWLLAHGKGKTWGGA 303 Query: 286 SKVIQVDERGFVLGRRAPVTLGITGSVGPTVQALLEQVEGKTD-----GSFLQQANAQRE 340 K +Q+D + + P+ + G V V AL ++G T + ++A+ + Sbjct: 304 KKFVQIDIQANEMDSNVPIAAPLVGDVESCVNALRAGLKGMTKPTEWMDAIAERASGSKA 363 Query: 341 RWNAKLDSAAEIKRHHKKIKPQSLARALSDLADDDAQFVIDTGVVTLWCGNWIRQRGQQR 400 + KL +A I + SL L + +++ G L I + Q R Sbjct: 364 KLGTKLATATPIMNYF-----NSLGAIRDVLKNHQDVTLVNEGANALDNARMIIDQYQPR 418 Query: 401 LLASFNNAAV-GTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSVEHRLPVKVVV 459 V G +G A A++ + V+ GD F E T + LPV V++ Sbjct: 419 KRVDTGTWGVMGVGMGSAVA-AAVETGKPVVAVCGDSAFGFSGMEIETITRYNLPVTVII 477 Query: 460 FNNREWGLVHLEMEEAGMPAFEGSEF---PNADFAAFARACGGQGFTARTPDELQDSLQQ 516 NN G ++ +EA PA + S PN + ++ GG+G TP+EL +L+ Sbjct: 478 MNN---GGIY-RGDEAN-PAHQVSCMTFNPNTRYDLLMQSVGGEGVRVNTPEELTKALEA 532 Query: 517 LLAASGPAVLDVFIDPA 533 L + P +++ IDPA Sbjct: 533 SLKSGKPTLIEAIIDPA 549 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,000,368 Number of extensions: 38964 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 3 Length of query: 564 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 477 Effective length of database: 713,682 Effective search space: 340426314 Effective search space used: 340426314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)