BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2515.p
         (310 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [...    69   3e-13

>gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398
           [Herminiimonas arsenicoxydans]
          Length = 475

 Score = 68.6 bits (166), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 18  VLPAPSGVRLKIMQMCQQEDIALSDLVAQVQGDPILAGRLIQIANIPNINKGRMVA---- 73
           VLP    V  +I+++    +I L+ L   +  DP L+ +++++AN P     R+      
Sbjct: 14  VLPTLPSVAFRIIELVNDPNINLTQLAECIASDPALSAKMLKVANSPLYTTQRVATNLRQ 73

Query: 74  AVNIDLLLMVGLHAVRQMALAISLTESARRGDCQEFDYQRFWSRSTAMACAGQALGELLQ 133
           AVN     M+G HA   +AL+ SL  S    +        FW R+   A A + LG+   
Sbjct: 74  AVN-----MMGTHATVTVALSFSLVRSLSGHEGNTL----FWRRTILAALACRLLGKHYG 124

Query: 134 VAPPAEMFTVALLADIGRLGLASARPRRYGELLRSGAQGTALRAQEKEVFGFHHLELAAA 193
                ++    LL DIG L L S  P  Y EL         L+A E+  FG  H E+   
Sbjct: 125 FNSD-DLLLAGLLQDIGILALRSVAPDEYAELQAITDHEELLKA-ERNRFGSGHDEVGYW 182

Query: 194 MMQDWLFP 201
           +++ W  P
Sbjct: 183 LLKRWGIP 190


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 538,950
Number of extensions: 19748
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 229
Effective length of database: 733,452
Effective search space: 167960508
Effective search space used: 167960508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)