BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2514.p
         (260 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094208|ref|YP_001099283.1| hypothetical protein HEAR0973 [...   206   1e-54

>gi|134094208|ref|YP_001099283.1| hypothetical protein HEAR0973
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  206 bits (523), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 2/229 (0%)

Query: 32  SAFAAHPLVTDDAGVQGSGGIQLEMNTDWSKQSGNAGHVGAFSFTYGVTDKLDLFFNLPQ 91
           S +A HP+VTDD   QG    Q+E+NTDW +  G  G +  F++TYG++D +D+  ++P 
Sbjct: 18  STWAMHPMVTDDTATQGRQRSQIEINTDWVRGRGYDGRIADFTYTYGLSDSVDIALDMPS 77

Query: 92  TFQSPTGTGVGDVSVGAKWRYYEADGLSLALKPEFFIPSGDETKGLGTGENSAGLTGIVS 151
              SP G  + DV++G KWR+ E DG+S A+ P   + +G E +GL  G  + G   I S
Sbjct: 78  NLSSPAG--LNDVAIGFKWRFAEMDGISFAVTPTLALSTGSEQRGLSNGTYNPGAALIGS 135

Query: 152 YETGPWTLHGNLGLRHNSYKLASDQQSQHSTLWRASAAVWYGLNEQWRLVADTGVAQNPN 211
           Y TG W    N+G+  N Y+    + +  + + RAS AV Y ++ QW +VADTG+AQN  
Sbjct: 136 YATGSWVWLANVGIVSNRYRQNELRAANRAIIRRASLAVTYAIDPQWTVVADTGIAQNMR 195

Query: 212 VGSKTLPSYALLGVIWSPNKTVDLDAGAKFGLNKVEVTRQFGVGVTLHF 260
              +  P+Y L G ++SPN+T+DLDAG KFGL  V  +RQ GVG+T+HF
Sbjct: 196 RSEQGNPAYFLFGAVYSPNQTIDLDAGIKFGLKNVGPSRQVGVGLTVHF 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 562,415
Number of extensions: 24931
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 180
Effective length of database: 736,747
Effective search space: 132614460
Effective search space used: 132614460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)