BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2512.p (255 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 157 7e-40 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 134 4e-33 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 123 7e-30 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 115 3e-27 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 112 1e-26 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 157 bits (396), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 97/242 (40%), Positives = 138/242 (57%), Gaps = 8/242 (3%) Query: 14 LSARLALVTGAGQGIGAACADALARQGATVICTDLDGERARATASRLGSSAQAFALDVTD 73 L+ ++ALVTGA +GIG A A ALA+QG VI T A A + L S + LDV D Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDVND 65 Query: 74 SS----ALNNLAARLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAFA 129 ++ ++ + + +LV NAG+ + A M DEEW+ V++ NL V + RA Sbjct: 66 AARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVL 125 Query: 130 RAMLARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWATRGVRVNAVA 189 R M+ G I+NI S+ G N Q +Y A+KA V ++R+LA E +R + VN VA Sbjct: 126 RGMMKAKHGRIINITSVVGSTGNA--GQMNYAAAKAGVAGMSRALAREIGSRNITVNCVA 183 Query: 190 PTYIATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASLITGAVINAD 249 P +I T + + L ++Q IS L P R+G PE+IAA V+FLAS AS ITG ++ + Sbjct: 184 PGFIDTDMTKTLSEQQ--ISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVN 241 Query: 250 GG 251 GG Sbjct: 242 GG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 17/246 (6%) Query: 17 RLALVTGAGQGIGAACADALARQGATVICT----DLDGERARATASRLGSSAQAFALDVT 72 RLALVTG G+G A LA G V+ T + AT G +A+ DV+ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 73 DSSALNNLAA----RLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAF 128 D + A + +DVLV NAG+ + ++M +W+ V+ NL VF + Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 129 ARAMLARGRGAIVNIGSMSGMIVNVPQ---PQCHYNASKAAVHHLTRSLAVEWATRGVRV 185 M+ RG G I+NI S VN + Q +Y+A+KA +H T++LA+E A + V V Sbjct: 123 CDGMVERGWGRIINISS-----VNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTV 177 Query: 186 NAVAPTYIATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASLITGAV 245 N ++P YI T ++ + ++ L ++ + P R+G+PEE+A +VA+LASD A+ +TGA Sbjct: 178 NTISPGYIGTKMVTAIPQD-VLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGAN 236 Query: 246 INADGG 251 I +GG Sbjct: 237 IAINGG 242 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 123 bits (309), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 124/218 (56%), Gaps = 20/218 (9%) Query: 38 RQGATVICTDLDGERARATASRLGSSAQAFALDVTDSSA----LNNLAARLPALDVLVCN 93 R A+ ICT + + G SA+ D+TD+ A L L P + VLV N Sbjct: 36 RDKASAICTAIIAD---------GGSAEVAVFDITDAEATKVALETLLEAGP-VQVLVNN 85 Query: 94 AGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAFARAMLARGRGAIVNIGSMSGMIVNV 153 AG+ S+ M+ +W V+ V+L G F + M+ G I+N+ S++ + N Sbjct: 86 AGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPLTMPMIRTRWGRIINVSSIAAVTGN- 144 Query: 154 PQPQCHYNASKAAVHHLTRSLAVEWATRGVRVNAVAPTYIATPLLQELEKEQALISRWLD 213 + Q +Y+A+K A+H T+SLA+E A+RG+ VNAVAP IAT +++E ++A+ + Sbjct: 145 -RGQVNYSAAKGALHSATKSLALELASRGITVNAVAPGIIATGMIEEAFDDKAI----QN 199 Query: 214 LTPQQRMGRPEEIAAVVAFLASDAASLITGAVINADGG 251 + P +R G+PEE+A ++ FLAS A+ I+G +I+ +GG Sbjct: 200 IVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGG 237 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 121/239 (50%), Gaps = 9/239 (3%) Query: 17 RLALVTGAGQGIGAACADALARQGATVICTDLDGERARATASRLGSSAQAFALDVTD--- 73 + ALV+G +G+GAA A L G V T A R +S F DV+D Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVT-YHHNADTAAEFRKNTSIPVFCWDVSDYAQ 61 Query: 74 -SSALNNLAARLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAFARAM 132 + + + +D+LV NAG+ + M+ +W V++ NLG VF R M Sbjct: 62 CQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNVIEGM 121 Query: 133 LARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWATRGVRVNAVAPTY 192 R G I+NI S++G + Q +Y A+KA + T+SLA+E A + + VNA+AP Y Sbjct: 122 RERNFGRIINISSVNGERGQI--GQANYAAAKAGIFGFTKSLALESARKNITVNAIAPGY 179 Query: 193 IATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASLITGAVINADGG 251 T ++ + +E ++ + + P +G +IA +V FLA +A+ ITGA + +GG Sbjct: 180 CDTDMVSAIPQE--VLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGG 236 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 121/212 (57%), Gaps = 15/212 (7%) Query: 54 RATASRLGSSAQAFALDVTD----SSALNNLAARLPALDVLVCNAGVVSNTPAEEMSDEE 109 RA G +A LDVTD SA+ + A+D+LV NAGV + +++ EE Sbjct: 20 RAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVNNAGVAARGRLLDVTPEE 79 Query: 110 WERVLSVNLGGVFKTCRAFARAMLARGRG------AIVNIGSMSGMIVNVPQPQCHYNAS 163 + V+ N G F + A+ M+AR +G I+NI S++G+ V +P+ Y+ S Sbjct: 80 YAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIASVAGLRV-MPELGA-YSMS 137 Query: 164 KAAVHHLTRSLAVEWATRGVRVNAVAPTYIATPLLQELEK-EQALISRWLDLTPQQRMGR 222 KAA+ H+T+++AVEW G+ VNA+ P YI T L QE K EQ + LD P++R+G+ Sbjct: 138 KAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKSEQGKL--LLDALPRKRIGK 195 Query: 223 PEEIAAVVAFLASDAASLITGAVINADGGYTC 254 PE++ ++ LA++ + I GA++ AD G + Sbjct: 196 PEDLDGLLLLLAAEESHFINGAIMTADDGMSA 227 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.129 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 421,164 Number of extensions: 14645 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 12 Length of query: 255 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 175 Effective length of database: 736,747 Effective search space: 128930725 Effective search space used: 128930725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)