BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2510.p
         (509 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas ...   150   2e-37

>gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 144/480 (30%), Positives = 214/480 (44%), Gaps = 40/480 (8%)

Query: 1   MRACLLGIDLGTSACKALLLSTEGRILASASAGYPVSQPHQRWVEQEPQAWIAAARLAVA 60
           M+  +L ID GT++ +A+L +  G+I       YP   P   WVE +  A I  ++LAVA
Sbjct: 1   MKKYILAIDQGTTSSRAILFNHAGQIHGMTQQEYPQIFPAPGWVEHDANA-IWHSQLAVA 59

Query: 61  QAM---QSAGAVQLLSIGLSGQMHGLTALDAQY-RTLRPAILWNDQRNEMEAAEITQAAG 116
           Q +   Q   A  + +IG++ Q       D Q    +  AI+W D+R      ++   A 
Sbjct: 60  QQVLKEQHLSAADIAAIGITNQRETTVLWDRQTGEPIAHAIVWQDRRTAALCDQLR--AD 117

Query: 117 GLSALLAQTGNRMLVGY-TGGKLLWMQKHEPHLYARLR-----VVLNPKD-YLRYVLTGE 169
           G + L  Q    +L  Y +G KL W+  H P   AR+R     +     D +L + L+G 
Sbjct: 118 GKAPLFQQKTGLVLDSYFSGTKLKWLLDHTPG--ARVRAERGELAFGTIDSWLIFKLSGN 175

Query: 170 IATEVSDASGTGLFDVRQRRWADDLIRAAGLDPAHWPACHESQVVSGKVHAQAASLFGIA 229
             T+ S+AS T LF++  ++W D+L+    +  +  PA   S  + G+ +    SLFG  
Sbjct: 176 HVTDTSNASRTLLFNIHTKQWDDELLALLDIPHSLLPAIVPSSGIVGQTYT---SLFG-- 230

Query: 230 PGIPVIGGGGDSVIQSLGAGVVAPGGWQTTIGT-------AGILAAALERPLSSPDGRIQ 282
             IP+ G  GD    + G     PG  + T GT        G  A A    L +  G   
Sbjct: 231 QSIPIAGIAGDQQAATFGQACHRPGMAKNTYGTGCFMLLNTGTQAIASHNNLLTTIG--W 288

Query: 283 VFCNVAPDRWHAM--GVSLNAGGALAWWRSAMQSPDSEEAPSFEAIVQAAAQSLPGARGL 340
              N    R   M  G    AG  + W R      D        + V+A A S+P   G+
Sbjct: 289 TLGNDVDARTDYMLEGSVFMAGAIIQWLR------DGLGIIQHSSDVEALATSVPDNGGV 342

Query: 341 LFLPYLNGERCPHPDPAARAAFIGLTARHGFADLARSVLEGVVHSLCD-MHALMSAMGVA 399
           +F+P  +G   P+ DP AR   +G+T     A +AR+ LE + +   D + A+     + 
Sbjct: 343 VFIPAFSGLGAPYWDPYARGTIVGMTRGSNKAHIARAALESIAYQTVDVLEAMQKDAQIL 402

Query: 400 PGWVSTSGGGARSAQWRQIQADMLECEVVTREGAAEGAALGAALLAGVGLQIWPDVEHAA 459
              +   GG AR+    Q QADML   V+ R    E  ALGAA LAG+ +  W   E  A
Sbjct: 403 LQELRVDGGAARNDLLMQFQADMLNVPVI-RPVVTETTALGAAYLAGLAVAFWESKEEIA 461


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 880,015
Number of extensions: 31363
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 423
Effective length of database: 716,977
Effective search space: 303281271
Effective search space used: 303281271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)