BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2509.p
         (238 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093489|ref|YP_001098564.1| putative phosphoglycolate phosp...    81   6e-17
gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2 ...    70   8e-14

>gi|134093489|ref|YP_001098564.1| putative phosphoglycolate
           phosphatase (PGP) (gph) [Herminiimonas arsenicoxydans]
          Length = 209

 Score = 80.9 bits (198), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 1/180 (0%)

Query: 20  LIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLI-EDILIDQEIAFDGAGLEA 78
           ++ +A D+  AVN   +  G A+L++     F+G G   L+ + I +D   +      + 
Sbjct: 1   MLHTAQDLHIAVNRMREGLGLASLDLDTAISFVGKGAENLVRKSIGVDFSASEVELRFQE 60

Query: 79  AVAAYIGHYQRHPASHTRFFPYVKEDLASLHAAGIRLGICTNKPHALTRQILDLLQLSPL 138
           A+  +  HY          +P V E L  + A G+RL   TNKP A T  ++    L   
Sbjct: 61  AMVLFEKHYFDVNGEFASAYPGVHEGLQEMQAKGLRLACVTNKPIAFTLPLMKKTGLHDY 120

Query: 139 VEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQATAAAADAPFFVVPWG 198
            E+  G D+    KPDP  L  V A   LAP     IGD+  D   A AA      VP+G
Sbjct: 121 FEIIYGGDSFAKRKPDPMQLLQVCADFKLAPAQIVAIGDSINDSKAARAAGCKVLNVPYG 180


>gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score = 70.5 bits (171), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 86/197 (43%), Gaps = 12/197 (6%)

Query: 11  AFIFDLDGTLIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLIEDILIDQEIA 70
           A +FDLDGTL D+APD+A AVN     +G A  + A +      G R LI        +A
Sbjct: 8   AILFDLDGTLADTAPDLAEAVNQLRVTRGLAPADYALLRPVASAGARGLI-------GVA 60

Query: 71  FDGAGLEAAVAAYIGHYQRHPAS----HTRFFPYVKEDLASLHAAGIRLGICTNKPHALT 126
           F     +A  A    ++ R+ A+    ++R F  V E L++L    I  GI TNK   LT
Sbjct: 61  FGITPQDAEYAELRDNFLRNYAAAIAVNSRLFEGVSELLSNLQEKNIAWGIVTNKAAQLT 120

Query: 127 RQILDLLQLSPLVEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQATAA 186
            Q++  + L     V  G D     KP P  L   A  + + P    Y+GD   D     
Sbjct: 121 DQLVPQIGLHHAACVISG-DTTAHPKPHPAPLFEAAKRIGVQPEHCWYVGDDLRDIQAGQ 179

Query: 187 AADAPFFVVPWGGGSQV 203
           AA        WG   +V
Sbjct: 180 AAGMTTIAAAWGYCGEV 196


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 460,593
Number of extensions: 18745
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 159
Effective length of database: 740,042
Effective search space: 117666678
Effective search space used: 117666678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)