BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2507.p
         (237 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094322|ref|YP_001099397.1| ribose-5-phosphate isomerase A ...   143   9e-36

>gi|134094322|ref|YP_001099397.1| ribose-5-phosphate isomerase A
           [Herminiimonas arsenicoxydans]
          Length = 223

 Score =  143 bits (360), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 130/217 (59%), Gaps = 11/217 (5%)

Query: 3   LNQNEAKKLAGRHAILEFVRDDMRLGLGSGTTSHFFVRELAKHIADGLNVTCTATSRSTI 62
           + Q+E K+   R AI E+V     +G+G+G+T++FF+ EL K I D +     A+S +T 
Sbjct: 1   MTQDEMKQAVARAAI-EYVVPGEIIGVGTGSTANFFIDELGK-IKDRIK-GAVASSEATA 57

Query: 63  DVAREVGIPIMDPNEIGQIDLTIDGPDEIDREFRMIKGGGACLLWEKIIAHASTRMITIC 122
              +  GI + D NEI  + + IDG DEI  +  MIKGGGA L  EKI+A  + + + I 
Sbjct: 58  QRLKSHGIAVFDLNEIDAMSVYIDGADEITAQGAMIKGGGAALTREKIVASVAKQFVCIA 117

Query: 123 DESKLVEHLGAFPLPVEVVQFAWKQTERRVAGLLREFGIDARIVRRSRDERPVVTDSGHF 182
           D SKLV+ LG FPLPVEV+  A     R++A L    G + R+  R +D +P+VTD+G F
Sbjct: 118 DGSKLVDLLGNFPLPVEVIPMAQAVVARKLAAL----GGEPRL--RLKDGKPLVTDNGCF 171

Query: 183 ILDC-HCQVIDGAELLETELNRIPGVVENGLFTREAA 218
           I+D    ++ D AE LE ++N I GVV  GLF R  A
Sbjct: 172 IIDVLGLKIQDPAE-LEAQINNIVGVVTVGLFARRGA 207


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 457,432
Number of extensions: 18762
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 158
Effective length of database: 740,042
Effective search space: 116926636
Effective search space used: 116926636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)