BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2505.p (507 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding pro... 105 5e-24 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 104 1e-23 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 96 3e-21 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 96 5e-21 gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding pro... 94 2e-20 >gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 306 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 115/218 (52%), Gaps = 14/218 (6%) Query: 15 LRVENLSKRYGA-FHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFL 73 + V L+K+Y + F AL+ I L IRRG I LLG NGAGK+TL+ +I G PS G + Sbjct: 5 ISVRQLTKQYASGFQALKEINLDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTVLA 64 Query: 74 DGEEIQGADVKRMEAA--GVFLVPQEPMIIEHMSVMENLMLGLWPAKRGFVAWRRMRENA 131 DG +I V+ AA + LVPQE +V + RG R + Sbjct: 65 DGHDI----VRDYRAARSKIGLVPQELSTDAFETVWATVNFS-----RGIFGKPRNHAHI 115 Query: 132 ARMLAGTGIDAERLAG--TLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFA 189 ++L + ++ A +L +R++ I +A+ I+ LDEPTA + V R ++ Sbjct: 116 EKVLRSLFLWDKKDAKIFSLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWE 175 Query: 190 FMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELV 227 +R LRASGVT I +H+ +E ++ D + V+R GE++ Sbjct: 176 MVRGLRASGVTIILTTHYIEEAEEMADRIGVIRKGEII 213 Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 57/87 (65%) Query: 402 DSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGV 461 D + + +LSGG +++V + + L+ P++L LDEPT G+DV +++D+ ++ L +GV Sbjct: 126 DKKDAKIFSLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRASGV 185 Query: 462 SVIIVSTDVDELARAADRICIFQRGRI 488 ++I+ + ++E ADRI + ++G I Sbjct: 186 TIILTTHYIEEAEEMADRIGVIRKGEI 212 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 133/249 (53%), Gaps = 12/249 (4%) Query: 13 LALRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIF 72 +++ V+N++K++G F AL ++L G + LLG +G GK+TL+ +I+G P G++ Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 73 LDGEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGL--WPAKRGFVAWRRMREN 130 LDGE+ V+ + VF Q + +HM+V EN+ GL PA + ++E Sbjct: 61 LDGEDASARHVRERQVGFVF---QHYALFKHMTVFENIAFGLRVRPAATR-PSESVIKEK 116 Query: 131 AARMLAGTGID--AERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLF 188 ++L +D A+R L R+++ + RA+ +++LDEP AL R +L Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 189 AFMRQLRAS-GVTFIFISHFNDEILDICDAVSVLRDG--ELVATCEEVCSLSSSQLSEFV 245 ++R+L VT IF++H +E L++ D + ++ G E + ++V + +S Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGF 236 Query: 246 LGRELDLFQ 254 LG ++LF+ Sbjct: 237 LG-NVNLFR 244 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 11/215 (5%) Query: 287 LELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGIA 346 LE GE+ G G G L R + GL GQ+ E A + R Q +G Sbjct: 23 LEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRERQ---VGFV 79 Query: 347 YLSDDRRRDGVVGHLSIRENIALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAED 406 + + + H+++ ENIA L R A E ++ T + + A+ Sbjct: 80 F-----QHYALFKHMTVFENIAFG-LRVRPAATRPSESVIKEKVTKLLELVQLDW-LADR 132 Query: 407 AVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLS-QAGVSVII 465 LSGG +Q++ L R LA PR+L+LDEP +D V++++ R L +L + V+ I Sbjct: 133 YPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIF 192 Query: 466 VSTDVDELARAADRICIFQRGRIAHVVSGDDISTD 500 V+ D +E AD+I + +G + + + D+ + Sbjct: 193 VTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNN 227 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 14/228 (6%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L + N+SKR+G AL + + I +G I+GL+G NGAGK+T +I+G G L Sbjct: 11 LNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELA 70 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLML--------GLWPAKRGFVAWRR 126 G+ + + AG+ Q + M+ +EN+M+ GL+ A A R+ Sbjct: 71 GKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQ 130 Query: 127 ----MRENAARMLAGTGID--AERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALT 180 +R A +L GI A R A L +R+L I RA+ + ++ LDEP A + Sbjct: 131 EEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 190 Query: 181 VPDRLQLFAFMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVA 228 ++L L + +++A G T + I H ++ +CD ++VL G+ +A Sbjct: 191 ATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIA 238 Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 17/221 (7%) Query: 286 RLELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGI 345 +++ G+I G G G G + GL SG SF P P GI Sbjct: 30 NVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSG--SFELAGKAYSPSAPHLVAKAGI 87 Query: 346 AYLSDDRRRDGVVGHLSIRENIALSSLPR----------RLRAGLVDEGEERQVCTSYFR 395 A + R + G ++ EN+ + R +A +E R Sbjct: 88 ARTFQNIR---LFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQEEAAIRARAMELLD 144 Query: 396 RMGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQ 455 +GI A A LS G+Q+++ + R LAT P+LL LDEP G++ K + +L + Sbjct: 145 FVGI-AQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVK 203 Query: 456 LSQAGVSVIIVSTDVDELARAADRICIFQRGR-IAHVVSGD 495 + G +++++ DV + DRI + G+ IA V D Sbjct: 204 IKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPAD 244 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 138/515 (26%), Positives = 225/515 (43%), Gaps = 64/515 (12%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKST--LVGLISGQRVPSEGRIF 72 L ++NL + + ++ I G L+GE+G+GK+ L L Q GRI Sbjct: 4 LEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRIL 63 Query: 73 LDGEEIQGADVKRMEAA-------GVFLVPQEPMIIEH------MSVMENLMLGLWPAKR 119 +G++I ++R EAA V ++ QEPM + + E LML + R Sbjct: 64 FEGQDI----LQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSAR 119 Query: 120 GFVAWRRMRENAARMLAGTGI-DAERLA----GTLDAVARRKLNILRAMFSGGSIIILDE 174 A R A +L TGI + +R A L R++ I A+ ++I DE Sbjct: 120 -IAALR-----AIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADE 173 Query: 175 PTAALTVPDRLQLFAFMRQL-RASGVTFIFISHFNDEILDICDAVSVLRDG---ELVATC 230 PT AL V ++Q+ + QL R + + I+H + + D V V+ G E+ AT Sbjct: 174 PTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATR 233 Query: 231 EEVCSLSSSQLSEFVLGRELDLFQRDRRPAHALVSAE-VISLFGVSG---LNDDKLCVDR 286 E + + + + + L A L+SAE V F + + VD Sbjct: 234 ELFTAPRETYTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKTTPFVAVDD 293 Query: 287 LELQ--PGEIIGFTGLPGEGAKELARGLFGLLPLR-SGQISFPREPACSLPQ---RPDQA 340 + +Q PGE +G G G G L L L R SG I+F +P ++ RP +A Sbjct: 294 VSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRA 353 Query: 341 LAMGIAY------LSDDRRRDGVVGHLSIRENIALSSLPRRLRAGLVDEGEERQVCTSYF 394 M I + LS R + +VG E +AL P+ AG+ R+ Sbjct: 354 -RMQIVFQDPFASLSPRRTIEQIVG-----EGLALHQ-PQLGAAGI------RKAVADAL 400 Query: 395 RRMGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVG-VKQDVLRIL 453 +G+ D + SGG +Q++ + RVL P L++LDEPT +DV +Q + +L Sbjct: 401 LEVGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLL 460 Query: 454 DQLSQAGVSVIIVSTDVDELARAADRICIFQRGRI 488 + + ++ I +S D+ + A R+ + + G++ Sbjct: 461 ELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKV 495 >gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 303 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 14 ALRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFL 73 A+++ + K Y A AL G++L I G GLLG NGAGK+TL+ +++G G I + Sbjct: 3 AIQINQVEKSYRALKALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSIKV 62 Query: 74 DGEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENL-MLGLWPAKRGFVAWRRMRENAA 132 G ++ + + GV VPQE + +V E L M + + AW + Sbjct: 63 HGYDVVTDYRQTRKLLGV--VPQELVFDPFFTVRETLRMQSGYYGLKNNDAWIDEVMHHL 120 Query: 133 RMLAGTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFAFMR 192 + + L+G + +R++ + +A+ +I+LDEPTA + V R L+ F+ Sbjct: 121 DLTGKADANMRALSGGM----KRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFIS 176 Query: 193 QLRASGVTFIFISHFNDEILDICDAVSVLRDGELV---ATCEEVCSLSSSQL 241 +L G T + +H+ +E +C+ V++L+ G++V AT + ++ SQ+ Sbjct: 177 RLNREGHTVVLTTHYLEEAQALCNRVAMLKAGQVVALDATSTLIKRIAGSQM 228 Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 59/97 (60%), Gaps = 3/97 (3%) Query: 403 SAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGVS 462 A+ + LSGG +++V + + L P +++LDEPT G+DV ++Q + + + +L++ G + Sbjct: 125 KADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNREGHT 184 Query: 463 VIIVSTDVDELARAADRICIFQRGRIAHVVSGDDIST 499 V++ + ++E +R+ + + G+ VV+ D ST Sbjct: 185 VVLTTHYLEEAQALCNRVAMLKAGQ---VVALDATST 218 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 958,749 Number of extensions: 41825 Number of successful extensions: 358 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 70 Length of query: 507 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 421 Effective length of database: 716,977 Effective search space: 301847317 Effective search space used: 301847317 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)