BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2503.p
         (564 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094432|ref|YP_001099507.1| putative oxidoreductase [Hermin...    62   1e-10
gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD ...    57   3e-09

>gi|134094432|ref|YP_001099507.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 10/151 (6%)

Query: 15  VGQAHVLTSAAAKRRYCRGYRY-GRGEALAVVRPGSLRQMWQVLQACHQADVIVICQAAN 73
           +G  +VLT+A     Y   +R    G A AVV+P    ++  +++ CHQ  V ++ Q  N
Sbjct: 12  IGAQYVLTAADETAAYLTDWRRRFTGSAFAVVKPACTEEVAAIVRLCHQFHVPIVPQGGN 71

Query: 74  TGLTGGSTPVEEGYDRPVIVLNTLRLRRLYLLDQGRQVLT-QPGVTLDQLERRLKPLGRE 132
           TGL  GS P         IVL+  RL R+  +D     +T + G  L  +++     GR 
Sbjct: 72  TGLVLGSIP---DASNTAIVLSLTRLNRIRAIDSVNNTMTVESGCILQNVQQAAADAGRL 128

Query: 133 -PHSVIGS-SCMGASVTGGICNNSGGSLIRR 161
            P S+    SC   ++ G + +N+GG+ + R
Sbjct: 129 FPLSLASEGSC---TIGGNLSSNAGGTAVLR 156


>gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD
           [Herminiimonas arsenicoxydans]
          Length = 512

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 4   RETLIEGLCEIVGQAHVLTSAAAKRRY-CRGYRYGRGEALAVVRPGSLRQMWQVLQACHQ 62
           + T+++ L  ++ +  VL +    R Y C G        + VV P +   +  VL+ C  
Sbjct: 31  QRTVVDALRAVLPEQCVLFNEEDTRPYECDGLAAYAQLPMVVVLPLNEAHVIAVLKVCRD 90

Query: 63  ADVIVICQAANTGLTGGSTPVEEGYDRPVIVLNTLRLRRLYLLDQ-GRQVLTQPGVTLDQ 121
             V V+ + A TGL+GG+ P+ +G     IVL+T RL ++  +D   R  + QPGV    
Sbjct: 91  LSVRVVPRGAGTGLSGGALPIADG-----IVLSTARLNKIVKVDAYARTAVVQPGVRNLA 145

Query: 122 LERRLKPLGREPHSVIGSSCMGASVTGGICNNSGG 156
           +   +  LG   ++   SS +  ++ G +  NSGG
Sbjct: 146 ISEAVASLGLY-YAPDPSSQIACTIGGNVAENSGG 179


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,118,922
Number of extensions: 48728
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 477
Effective length of database: 713,682
Effective search space: 340426314
Effective search space used: 340426314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)