BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2500.p (240 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 100 1e-22 gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 84 8e-18 gi|134094411|ref|YP_001099486.1| GntR family transcriptional reg... 67 6e-13 gi|134093377|ref|YP_001098452.1| GntR family transcriptional reg... 67 6e-13 gi|134095633|ref|YP_001100708.1| GntR family transcriptional reg... 62 2e-11 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 11/201 (5%) Query: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 SE + I+ I G++ PG + E ELA+ +G+SR P+REA+ +L ++V P GA Sbjct: 5 SEVLREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGA 64 Query: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV-LDTHEKDEAFQAGRGY 136 V + + L+E+F++ LE M RLAA+RMS A L+ L E ++ + + Sbjct: 65 IVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAGHATLKATHLACEEARDSADSDAYF 124 Query: 137 YQQEGDYDFHYKIIQASGNQIL---TRILCGELYQLARMYRIQYSATPNRPRQAFAEHHR 193 Y+ E +FH +I S N L R+L L R YR NR + +F EH Sbjct: 125 YKNE---EFHQQIYIGSQNSFLEEQARVLQRRL----RPYRRLQLRVRNRVQASFDEHGA 177 Query: 194 ILDALADGDGELADLLMRRHI 214 ++DA+ +G GELA L+R+HI Sbjct: 178 VVDAIIEGKGELAAELLRQHI 198 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 83.6 bits (205), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 3/209 (1%) Query: 13 EGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRV 72 E + L + V +Q+ I++G +APG K++E E+ GISR PLREA+ L + L+ Sbjct: 20 ERQRLHDAVVEHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIA 79 Query: 73 PHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQA 132 P+ GA V + + E F++ LE ++ LAA+R+S AE+ +++ + + A Sbjct: 80 PNRGAFVSKMNDNEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLVCRAQND 139 Query: 133 GRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAFAEHH 192 GYY + + H KI +A+ N +L +I +L + R + + + +A EH Sbjct: 140 LPGYYSR--NQTIHNKINEAARNSMLRQIYLSINRRLLAL-RFKSNFQEAKWDRAIHEHD 196 Query: 193 RILDALADGDGELADLLMRRHIGASRRNI 221 ++ AL DG+ ++R+H+ R ++ Sbjct: 197 EMIKALESRDGKRLAAILRQHLLDKRDSV 225 >gi|134094411|ref|YP_001099486.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 248 Score = 67.4 bits (163), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 63/106 (59%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L++ + +++ AI+ I PGS ISE L+ + I R P+REAI RL ++LL+ +P G Sbjct: 39 LTDLAYEQLEEAIITLRIPPGSVISELTLSEMFNIGRTPIREAIQRLAREHLLLVLPQRG 98 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLD 122 V + L+ ++L + R +E + C+ AA+R + AE + R+ D Sbjct: 99 VMVPEVDLKKQLKLLETRREVERLICKSAARRATPAEREVFARLHD 144 >gi|134093377|ref|YP_001098452.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 249 Score = 67.4 bits (163), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 9/193 (4%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L++ + +I+ AI+ I PGS +SE L+ I R P+REAI RL ++LL+ +P G Sbjct: 40 LTDIAYEQIEEAIITLRIPPGSVVSELTLSEMLNIGRTPIREAIQRLAREHLLLVLPQRG 99 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGY 136 + + L+ ++L + R +E + C+ AA+R + E R+ D E A Sbjct: 100 LLIPEIDLKKQLKLLETRREVERLICKSAARRATEEERAAFARLHD--EFMHASSTNDDV 157 Query: 137 YQQEGDYDFHYKIIQASGNQI---LTRILCGELYQLARMYRIQYSATPNRPRQAFAEHHR 193 D +F+ + A+ N+ R++ G L + R + Y T + P A H Sbjct: 158 SFMRSDREFNELALIAARNEFAEGAMRLMHG-LSR--RFWYFHYKQTADLPEMARL-HAT 213 Query: 194 ILDALADGDGELA 206 + A+A GD +LA Sbjct: 214 VAGAIAKGDVKLA 226 >gi|134095633|ref|YP_001100708.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 8 SGAEREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQN 67 S E GE ++ +R ++ IV ++ PGSKISE L R+ G R PLREA+ RL + Sbjct: 12 SEMEANGENQAQMAYRILEEMIVTLKLPPGSKISEKALNRSLGFGRTPLREALQRLAIEG 71 Query: 68 LLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLD--THE 125 + +P G V + L + + ++R LE ++ A R +R +++ RRV + Sbjct: 72 SVKILPRSGVIVSEIDLADQLNMIEVRRELE----KIIAGRAARLAMEDQRRVFSKLAED 127 Query: 126 KDEAFQAGRGYYQQEGDYDFHYKIIQASGNQ 156 D A + E D +F+ I + N+ Sbjct: 128 FDRAAEENDSTIFIETDREFNALSIATAQNK 158 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 410,089 Number of extensions: 14320 Number of successful extensions: 54 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 6 Length of query: 240 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 161 Effective length of database: 740,042 Effective search space: 119146762 Effective search space used: 119146762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)