BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2497.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   127   4e-31
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...   111   2e-26

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  127 bits (320), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 18/225 (8%)

Query: 2   KLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLT 61
            LDF  +  +W  LL G   T+++T  + + G + G L+ L RL+  + L + L   Y+ 
Sbjct: 3   DLDFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAF-LAAAYVN 61

Query: 62  LVRGTPLLVQLFLWFFGLP-------------HVGLILPAFVCGILGLGIYSGAYISEIV 108
           L+R  PLL+ +F ++F +P              +G    A++  I+    +  AY  EI+
Sbjct: 62  LMRSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIM----FEAAYFCEIM 117

Query: 109 RGSIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLT 168
           R  IQSI +GQ+ AA +LGL Y  AMR V+LPQAF  M+P L  + I L ++ +LVSLL 
Sbjct: 118 RAGIQSISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLN 177

Query: 169 IADLMHEGEKIISITYRSLETYLVIALIYLVLTTVTTLILRRIEK 213
           + D +    KI     R +E YL +A++Y VL+   + ++++++K
Sbjct: 178 VTDFVGASVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQK 222


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  111 bits (278), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 20/224 (8%)

Query: 4   DFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLV 63
           D  G W     LL G   T+ +   + +   VLG LIG+ R   +R L+ GL   Y+ L 
Sbjct: 12  DGDGTWGY--MLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLV-GLGGAYVELF 68

Query: 64  RGTPLLVQLFLWFFGLPHVGLILPA--------------FVCGILGLGIYSGAYISEIVR 109
           R  PLLVQ F+W+F +P  GL+ PA              FV  I+ LG ++ + I+E VR
Sbjct: 69  RNIPLLVQFFVWYFVIP--GLV-PAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVR 125

Query: 110 GSIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTI 169
             IQS+ RGQ  A  +LGL      R V+LP A+  +IPPL +E + LIKN+A+   + +
Sbjct: 126 SGIQSLPRGQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGL 185

Query: 170 ADLMHEGEKIISITYRSLETYLVIALIYLVLTTVTTLILRRIEK 213
            +L     ++  +T+R  E +    L+Y+V+  +   ++  +E+
Sbjct: 186 VELFFRTREMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVER 229


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.145    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 331,101
Number of extensions: 11648
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)