BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2496.p (257 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 245 2e-66 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 150 4e-38 gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-b... 143 8e-36 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 141 3e-35 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 139 1e-34 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 245 bits (625), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/245 (51%), Positives = 167/245 (68%), Gaps = 5/245 (2%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 ++E+K + K +G VL +VA VVV+ GPSGSGKST ++ +NGLE + G++ V Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 G +V P++NL ALR+ +GMVFQ+F LFPHL++ +N+TL + G +EA E Sbjct: 61 DGISVGD-----PKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAE 115 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 GL+ L +VGL + +PG LSGGQ+QRVAIARALAM+P MLFDEPTSALDPE++ EV Sbjct: 116 RGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEV 175 Query: 185 LQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRSF 244 L VM LA +GMTM++VTHEMGFAR+VA+ V+ MD G+IVE F R R R F Sbjct: 176 LDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDF 235 Query: 245 LQTML 249 L ++ Sbjct: 236 LAKII 240 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 150 bits (380), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 17/246 (6%) Query: 6 VEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMVC 65 +EVK + K FG + L + ++ ++GPSG GK+T LR + GLE + G V++ Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 66 GHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLA----PTCLRGVPRKE 121 G S R + E +VG VFQ + LF H+TV +NI P R P + Sbjct: 63 GEDA--SARHVRER-------QVGFVFQHYALFKHMTVFENIAFGLRVRPAATR--PSES 111 Query: 122 A-QEHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPEL 180 +E +LL+ V L+ A YP LSGGQ+QR+A+ARALA+EP+V+L DEP ALD ++ Sbjct: 112 VIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKV 171 Query: 181 VGEVLQVMQDLAAE-GMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREA 239 E+ + ++ L E +T + VTH+ A EVAD +V+M+ G + + G P ++ +P Sbjct: 172 RKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASP 231 Query: 240 RTRSFL 245 FL Sbjct: 232 FVYGFL 237 >gi|134094341|ref|YP_001099416.1| phosphate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 252 Score = 143 bits (361), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 135/255 (52%), Gaps = 18/255 (7%) Query: 1 MQQPIVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGL------ 54 M + +E+ L +G LK I+ + +V IGPSG GKST LR N + Sbjct: 1 MIKKTLEIANLNFFYGTFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPG 60 Query: 55 ETAEGGTVMVCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCL 114 + AEG +M G +++ G+ +++ LRA+VGMVFQ FP ++V DNI Sbjct: 61 QRAEG-KIMYHGKNILEPGQ-----DVNMLRAKVGMVFQKPTPFP-MSVYDNIAFGVRLY 113 Query: 115 RGVPRKEAQEHGLRLLKKVGLEHKAKDYPG----TLSGGQKQRVAIARALAMEPKVMLFD 170 +P+ E E L K L + KD +LSGGQ+QR+ IAR +A++P V+L D Sbjct: 114 ENLPKGEMDERVEWALNKAALWTEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPDVLLLD 173 Query: 171 EPTSALDPELVGEVLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPS 230 EPTSALDP ++ +++ +L + T+ IVTH M A +D M G +VE G Sbjct: 174 EPTSALDPISTAKIEELISELKGD-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETD 232 Query: 231 AIFTDPREARTRSFL 245 IF +P + T+ ++ Sbjct: 233 QIFMNPNKKDTQDYI 247 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 135/244 (55%), Gaps = 11/244 (4%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 ++E++ L + FG + V+ I ++ + ++GPSG GK+T LR + G + + G +++ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 G V + PE + V VFQ++ LFPH+TV NI P + P+ E ++ Sbjct: 63 DG---VDLTGVPPEQRV------VRTVFQNYALFPHMTVAGNIAF-PLEMANTPKSEIKQ 112 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 L+ V L A YP LSGGQ+QRV+IARAL PK++L DEP SALD +L ++ Sbjct: 113 KVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQM 172 Query: 185 LQVMQDLAAE-GMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRS 243 + +L E G+T + VTH+ A ++ + VM+ G+I + P+ I++ PR Sbjct: 173 QIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVAD 232 Query: 244 FLQT 247 F+ T Sbjct: 233 FIGT 236 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 7/223 (3%) Query: 5 IVEVKGLQKSFGQHLV-LKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVM 63 ++E + + K + Q++ L I +V ++V + GPSG+GKST L+ + +E GTV+ Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 64 VCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQ 123 V H + GR+ S L LR +G++FQ L +VL N+ L P + G R +A+ Sbjct: 61 VSDHDI---GRI-KNSGLPYLRRNLGLIFQQQRLLSDRSVLANVML-PLIVCGAARADAE 115 Query: 124 EHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGE 183 L KVGL KA P TLSGG++QRV+IARA+ P+++L DEPT+ LD E + Sbjct: 116 RRARAALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANK 175 Query: 184 VLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVES 226 VL ++ A G+T LI TH+ F + A V+ +DHG I+ES Sbjct: 176 VLDALKAFHAVGVTCLISTHDEQFL-DTATRVIYLDHGKIIES 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 483,434 Number of extensions: 19174 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 52 Length of query: 257 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 177 Effective length of database: 736,747 Effective search space: 130404219 Effective search space used: 130404219 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)