BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2492.p (145 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095516|ref|YP_001100591.1| universal stress family protein... 132 9e-33 gi|134095525|ref|YP_001100600.1| universal stress family protein... 117 3e-28 gi|134093667|ref|YP_001098742.1| hypothetical protein HEAR0391 [... 115 1e-27 gi|134094791|ref|YP_001099866.1| universal stress protein [Hermi... 108 9e-26 gi|134096496|ref|YP_001101571.1| universal stress family protein... 99 6e-23 >gi|134095516|ref|YP_001100591.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 140 Score = 132 bits (331), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 91/145 (62%), Gaps = 5/145 (3%) Query: 1 MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60 M K ILLATDGS L ++V AAI A S GSK+VGLSVA PE+ + D+ + Sbjct: 1 MLKTILLATDGSDLSKKAVTAAIDFAASYGSKIVGLSVAE-----VFPELFLDYDLRAIE 55 Query: 61 EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120 E + RA++ + A++ GV C V G PY+EI++ A HCDAI MAS + Sbjct: 56 EDMQKRAVSDANFVEECAKKAGVACEVHTVTGVHPYQEIIKAANDFHCDAIFMASHGKKG 115 Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145 + ++LLGS+TQK+LAHS +PVLVYR Sbjct: 116 IDKILLGSETQKVLAHSTIPVLVYR 140 >gi|134095525|ref|YP_001100600.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 143 Score = 117 bits (293), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/145 (46%), Positives = 94/145 (64%), Gaps = 2/145 (1%) Query: 1 MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60 MFK ILLATDGS+L +++V+A + AK GSK+VGLSVA L +P + + E D Sbjct: 1 MFKKILLATDGSKLSDKAVQATLQFAKEHGSKIVGLSVATIYPYLPVPGME-AISGEFVD 59 Query: 61 EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120 A +A +VE I+A+A GV V VA+G EEI++ A HCD+I MAS R+ Sbjct: 60 -AITNQAEKNVEKISALAASLGVDAEVHVAEGSSACEEIIKTAAKYHCDSIFMASHGRTG 118 Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145 L +L+LGS+ QK+LA+SK+PV + + Sbjct: 119 LDKLMLGSEAQKVLAYSKLPVTIIK 143 >gi|134093667|ref|YP_001098742.1| hypothetical protein HEAR0391 [Herminiimonas arsenicoxydans] Length = 147 Score = 115 bits (287), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 4/148 (2%) Query: 1 MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGV---DVE 57 MFK IL+ TDGS L ++++ AAI AK+ +LV L VA ++ E GV D Sbjct: 1 MFKKILVPTDGSPLSDKAITAAIEFAKTVNGELVTLCVAEPYVYSALVE-GAGVFPMDSV 59 Query: 58 RTDEAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKA 117 DE + A +V+ A+AR +GV C VA PYEEI+R AE CD I MAS Sbjct: 60 AYDEKAQEIAQHNVDKAAALARAQGVTCKTAVALSFSPYEEIVRTAEASACDVIFMASHG 119 Query: 118 RSTLGRLLLGSQTQKLLAHSKVPVLVYR 145 R L +L +GS+TQK+LAHS +PVLV+R Sbjct: 120 RKGLNKLFVGSETQKVLAHSTIPVLVFR 147 >gi|134094791|ref|YP_001099866.1| universal stress protein [Herminiimonas arsenicoxydans] Length = 143 Score = 108 bits (271), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 2/145 (1%) Query: 1 MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60 MFK ILLATDGS L +++V+AA+ AK GSK+VGLSVA P + Sbjct: 1 MFKKILLATDGSELSDKAVQAALQFAKEHGSKIVGLSVATIYPYF--PVYGMEATSGEFA 58 Query: 61 EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120 +A A V I A GV V V +G +EI++ A+ HCDAI MAS R Sbjct: 59 QAISKEAEKYVHKIATHAASLGVDAEVHVVEGTSASDEIIKAADKYHCDAIFMASHGRKG 118 Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145 L + LLGS+ QK+L HSK+PV +++ Sbjct: 119 LDKFLLGSEAQKVLVHSKLPVTIFK 143 >gi|134096496|ref|YP_001101571.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 135 Score = 99.4 bits (246), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 10/145 (6%) Query: 1 MFKNILLATDGSRLCNESVKAAIALAKSCGSKLVGLSVAGNLRALSIPEISVGVDVERTD 60 MFK I+L +DGS L N++++ + AK GS +VGLSV + Sbjct: 1 MFKKIMLPSDGSDLSNKAIEKTVQFAKENGSTVVGLSVEQIYPYFPYANLP--------- 51 Query: 61 EAGRARALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAELEHCDAIIMASKARST 120 RA + + + +A + GVP +G P+EEI++ AEL +CD++ M+S Sbjct: 52 -GAEERAAQNAKKVADIAGKAGVPFETHAVKGKSPHEEILKAAELFNCDSVFMSSHGEKG 110 Query: 121 LGRLLLGSQTQKLLAHSKVPVLVYR 145 L RLLLGS TQK+L HS +PV+V + Sbjct: 111 LDRLLLGSVTQKVLLHSPLPVVVLK 135 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.131 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 231,059 Number of extensions: 7886 Number of successful extensions: 59 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 5 Length of query: 145 Length of database: 1,000,347 Length adjustment: 73 Effective length of query: 72 Effective length of database: 759,812 Effective search space: 54706464 Effective search space used: 54706464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)