BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2486.p (522 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 96 4e-21 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 96 4e-21 gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding pro... 92 7e-20 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 91 9e-20 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 90 2e-19 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 13/210 (6%) Query: 28 LDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTLDGQPFAPVSRTQAEGL 87 ++G+ DL+ G++L + G +G+GK+TL II G++ + G++ + GQ +S+ Sbjct: 60 VNGVSFDLYFGEMLFIVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDDLADF 119 Query: 88 ---GIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAARAQMEVVGLGELDPW 144 I V Q+ +L P L+ AEN+ + + ++ W D A+ +++VGL E Sbjct: 120 RLNTIGFVFQDYHLFPRLTTAENVAIPLILKKNKWGDA---ITEAKKYLDIVGLKERVDI 176 Query: 145 TPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAML---TNREVELLFSRIERLRAEGVA 201 PV L G QQ V IAR ++ LILDEPTA L T R++ L F +++ E Sbjct: 177 VPV-KLSGGEQQRVAIARAMVSHPSILILDEPTASLDGDTGRKI-LAFVH-DQILNEKTC 233 Query: 202 IIYISHRLEELKRIADRIVVLRDGKLVCND 231 I+ ++H + ADRI+ + DGK+ D Sbjct: 234 ILIVTHD-TRIFEFADRIMYMEDGKITGFD 262 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 9/206 (4%) Query: 23 YAAPVLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTLDGQPFAPV--- 79 YA VL GI+LD+ G+ +A+ G +G+GKSTL ++ GL SAG++TL Q FA + Sbjct: 20 YAVDVLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLHQDFASLDEK 79 Query: 80 SRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAARAQMEVVGLG 139 +R + V Q +L+P S +N+ + + RR + R++ E ARA + VGL Sbjct: 80 TRGNLRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRR---VPREQAHETARAILARVGLE 136 Query: 140 ELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLFS-RIERLRAE 198 P G+L G +Q V +AR L+ C++ DEPT L F +E R Sbjct: 137 HRVTHVP-GELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTFDLMLELSRTL 195 Query: 199 GVAIIYISHRLEELKRIADRIVVLRD 224 G A + ++H + EL DRI+ L D Sbjct: 196 GTAFVIVTHDI-ELATHCDRILRLSD 220 >gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 306 Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 36/235 (15%) Query: 13 LLTLSGIGKSYAA--PVLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMT 70 ++++ + K YA+ L I+LD+ G++ AL G NGAGK+TL IICG+V+ S G + Sbjct: 4 IISVRQLTKQYASGFQALKEINLDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTVL 63 Query: 71 LDGQPFAPVSRTQAEGLGIRMVMQELN------LIPTLSIAENLFLEKLPRRFGWIDRKK 124 DG R +G +V QEL+ + T++ + +F + PR I++ Sbjct: 64 ADGHDIVRDYRAARSKIG--LVPQELSTDAFETVWATVNFSRGIFGK--PRNHAHIEKV- 118 Query: 125 LAEAARAQMEVVGLGELDPW----TPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAML 180 L L W + L G ++ V IA+ L + L LDEPTA + Sbjct: 119 -------------LRSLFLWDKKDAKIFSLSGGMKRRVMIAKALSHEPQILFLDEPTAGV 165 Query: 181 TNREVEL---LFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDD 232 +VEL ++ + LRA GV II +H +EE + +ADRI V+R G+++ +D Sbjct: 166 ---DVELRRDMWEMVRGLRASGVTIILTTHYIEEAEEMADRIGVIRKGEIILVED 217 Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 15/207 (7%) Query: 277 VRPASLALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVFIGDSQQPARIRSPKDAV 336 ++ +L + GE+ + G G+G+T L+ +I G G V + D R A Sbjct: 21 LKEINLDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTV-LADGHDIVR---DYRAA 76 Query: 337 KAGIAMVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGMLDHAAEARVAGEFVKKLRIRS 396 ++ I +V ++ A +VN S G+ +HA +V ++ L + Sbjct: 77 RSKIGLVPQELSTDAFETVWA-TVNFSRGIFGKPR-----NHAHIEKV----LRSLFLWD 126 Query: 397 GSVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGK 456 A+ LSGG +++V+IA+ L + I+ DEPT G+D+ + D++ + L A G Sbjct: 127 KKDAKIFS-LSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRASGV 185 Query: 457 GLLVVSSDLRELMQICDRIAVMSAGRI 483 +++ + + E ++ DRI V+ G I Sbjct: 186 TIILTTHYIEEAEEMADRIGVIRKGEI 212 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 29 DGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTLDGQPFAPVSRTQAEGLG 88 D + L G V ++ G NGAGKST + G ++G++ GQ Q +G Sbjct: 364 DKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMG 423 Query: 89 IRMVMQELNLIPTLSIAENLF--------------LEKLPRRFGWIDRKKLAEAARAQME 134 + Q L ++ EN+ L +LP F D ++ A AR +E Sbjct: 424 LARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH--DERRYAAEARCLLE 481 Query: 135 VVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLFSRIER 194 VGL + +L GHQ+ +EIAR L S + L+LDEP A LT+ E+E L I Sbjct: 482 YVGLDDYAE-EKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRN 540 Query: 195 LRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDI 233 L + + ++ + H ++ + ++D + VL GK++ + + Sbjct: 541 LASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTV 579 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 124/508 (24%), Positives = 215/508 (42%), Gaps = 58/508 (11%) Query: 7 PSQGSPLLTLSGIGKSYAAPV-LDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDAS 65 P P++ L+ IG Y V L I LD+ ++ L G +G GKS+L + G Sbjct: 2 PDMALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQ 61 Query: 66 AGAMTLDGQPFAPVSRTQAEGLGIRMVMQEL--NLIPTLSIAENLFLEKLPRRFGWIDRK 123 G+ + G A I + Q L NL PTLS+ ENL + R FG Sbjct: 62 QGSADVLGGDMRRKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENL--QFFARLFG----H 115 Query: 124 KLAEAARAQMEVVGLGELDPWT--PVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLT 181 AE R + L P+ PVG L G +Q + + LI LILDEPT + Sbjct: 116 DAAERRRRIDSLTRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD 175 Query: 182 NREVELLFSRIERLRAE--GVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTE 239 +S I +R + +++I + ++E + D +V + G+++ E Sbjct: 176 PLARAQFWSLIAGIRQQRPQISVIVATAYMDEAQGF-DWLVAMDGGRVLATGA----PQE 230 Query: 240 QLVQLMAGELTK--VDLDAEHRRIGAPLLRIRGL-------------------GRAPLVR 278 L Q + +L + L E ++ G + I+ L G V Sbjct: 231 LLAQTGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFGDFTAVD 290 Query: 279 PASLALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVFIGDSQQPARIRSPKDAVKA 338 + + GE+ G G G G+T ++++ G A +G ++ + P D Sbjct: 291 HVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLFGHEV-----DPHD---- 341 Query: 339 GIAMVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGMLDHAAEARVAGEFVKKLRIRSG- 397 + T R G + Q+ S+ + L+ + + L + EA VA +++ R G Sbjct: 342 ---IATRRRVG---YMSQSFSLYSELSVMQNLVLHARLFNVPEAEVAAR-AQQMLTRFGL 394 Query: 398 --SVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQG 455 + +L G +Q++ +A + +++ DEPT G+D A+ + +RL EL+ + Sbjct: 395 EEEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRD 454 Query: 456 KGLLVVSSDLRELMQICDRIAVMSAGRI 483 + + +S+ + CDRI++M AG++ Sbjct: 455 RVTIFISTHFMNEAERCDRISLMHAGKV 482 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,007,802 Number of extensions: 44241 Number of successful extensions: 442 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 64 Length of query: 522 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 436 Effective length of database: 716,977 Effective search space: 312601972 Effective search space used: 312601972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)