BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2481.p (583 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 447 e-127 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 409 e-115 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 408 e-115 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 395 e-111 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 391 e-110 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 447 bits (1151), Expect = e-127, Method: Compositional matrix adjust. Identities = 283/583 (48%), Positives = 377/583 (64%), Gaps = 28/583 (4%) Query: 5 FGNLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGI 64 F NLK+ VRL F L++ L+A +++ +++ ++ ++ ++ + +K R A GI Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGI 61 Query: 65 --NEQIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVD 122 N + R D ++ + AV + ++ L+ + V+A G+K + V Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLV---VSAEGKKLLATVA 118 Query: 123 EARQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGA 182 E R + R ++M L R +G + K+ A + Y+ A ++Q + E A Sbjct: 119 EKRATYTAIRDDVMNL-REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNF--EDA 175 Query: 183 KAVEDGAM--AIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRI 240 K D A + + VA+ I+L +++ RSI KPL AV VA VASGDLT RI Sbjct: 176 KGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRI 235 Query: 241 VPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGS 300 SKDETGQL+QAL+ MND+L ++ VR G D+IATAS +IASGNLDLS+RTE+QA S Sbjct: 236 TVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASS 295 Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKI 360 LEETAS+MEE+TSTV+QNADNARQANQ+A +AS +A +GG +V +VV TM+ IN S+RKI Sbjct: 296 LEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKI 355 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI Sbjct: 356 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLI 415 Query: 421 DDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 DDSV KV+ GS LVAEAGTTM +VV+SV+ VTDI+AEI AAS EQS+GIE++N+A+ QMD Sbjct: 416 DDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMD 475 Query: 481 EGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIR 540 + TQQNAALVE++AAAA+++ EQAA+LA+A+SIFKL Sbjct: 476 QVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSS----------------- 518 Query: 541 KPATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 + AT +P A + R ++PA + D WE F Sbjct: 519 RVATRLPVAASNAPATRQFAASPAPKKIANETRPVSGDDWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust. Identities = 267/587 (45%), Positives = 379/587 (64%), Gaps = 22/587 (3%) Query: 5 FGNLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGI 64 N+K+ RL F LI+ L+A + T +++ NIN + +++D + A + G Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 65 NEQIKYLRGMAIDINNAAGNEKRFGQMEVAV--KQTKEALDKIAARQVTAVGQKKIKA-V 121 + + R +A+ + + + F Q + KQ E I R + + +K++ A V Sbjct: 63 S--VNASRTLAL-VKASDPESQEFFQKAITAQSKQITEIQKSIEDR-INSDKEKELFAEV 118 Query: 122 DEARQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEG 181 + R + R ++ + G AN+ + K+ A + Y+D + +++ Sbjct: 119 AKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLAD 178 Query: 182 AKAVED---GAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTT 238 +D G MA+ + + +A+L ++ + + I +PL EA++VAE+VA GDLT Sbjct: 179 ESITDDYLSGRMAL---IIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTA 235 Query: 239 RI-VPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQ 297 R + ++DE G L+ AL +M NLV V+ +R GTD+IATAS EIASGNLDLS+RTEQQ Sbjct: 236 RSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQ 295 Query: 298 AGSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSS 357 A SLEETAS+MEE+TSTV+QNADN+RQANQ+A +AS +A++GG +V +VV TM IN S+ Sbjct: 296 ASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSA 355 Query: 358 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK 417 +KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK Sbjct: 356 KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIK 415 Query: 418 ALIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVT 477 LI DSV KV+ GS LVAEAGTTM+++V+ V+ V DI+AEI+AAS EQS GIE++N+AV+ Sbjct: 416 TLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVS 475 Query: 478 QMDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAE-MKKTSAPAMVQPQPQP 536 QMD+ TQQNAALVE++AAAA+++Q+QA +LA+A+S+F++ +++AP VQ Sbjct: 476 QMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMH 535 Query: 537 QPIRKPATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 +P+ P + ++T V+AP P D WE F Sbjct: 536 KPLAAPVKKSSSSSSLTVTESKKVAAP-------KPVAAGGDDWEEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 283/593 (47%), Positives = 373/593 (62%), Gaps = 48/593 (8%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRS---IDQIINDRYLKVRWAFDMRDG 63 NLK+ VRL FA+++ L+A + + ++ + ++ +++ L ++W Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAGNSAN 64 Query: 64 INEQIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTK-EALDKIAARQVTAVGQKKIKAVD 122 +R ++ NE +E+ Q K E+L I + + G+K + AV Sbjct: 65 AIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESL--IHSEE----GKKLMSAVG 118 Query: 123 EARQVFDTSRAELMALIRAGKGDA---ANEYVLRKITDAQNKYLDLARAFADSQSSQLSA 179 + R V+ R E+ L G A A + + K+ A Y + D Q Q++ Sbjct: 119 DKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQ--QVTF 176 Query: 180 EGAKAVED-----GAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASG 234 AK D G M + L A+A+ S +L +L++RSI +PL AV VA VA G Sbjct: 177 LEAKTEVDNLYASGRMFL---LTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGG 233 Query: 235 DLTTRIVPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSART 294 DL RI +S DETGQL+QALR MND LV VS VR G ++IATAS +IA+GNLDLS+RT Sbjct: 234 DLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRT 293 Query: 295 EQQAGSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEIN 354 E+QA SLEETAS+MEE+TSTV+QNADNARQANQ+A SAS +A +GG +V +VV TME+IN Sbjct: 294 EEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDIN 353 Query: 355 QSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAK 414 S++KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAK Sbjct: 354 SSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAK 413 Query: 415 EIKALIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINR 474 EIK LI DSV KV+ GS LVAEAG TME+VVNSV+ VTDI++EI AAS EQS+GIE++N+ Sbjct: 414 EIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQ 473 Query: 475 AVTQMDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQP 534 A+ QMD+ TQQNAALVE++AAAA+++ EQA LA+A+S+FKL + P Sbjct: 474 AIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL----------DGVAASTP 523 Query: 535 QPQPIRK----PATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 + +RK + P R + AP P+ AT D WE F Sbjct: 524 ATKTVRKIAAAASHHAPAKRAIAAPT-PVSPKAATGG----------DEWEEF 565 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/415 (56%), Positives = 302/415 (72%), Gaps = 25/415 (6%) Query: 180 EGAKAVEDG----AMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGD 235 E KA E+ M +++ VL + + + + R I +PL +AV++A +VA+GD Sbjct: 172 EAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGD 231 Query: 236 LTTRIVPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTE 295 LT +I +S +ETGQL+QAL+ MND+L VS VRRGT++I ASGEIASGN DLS+RTE Sbjct: 232 LTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTE 291 Query: 296 QQAGSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQ 355 QAGSLEETAS+MEE+TSTVRQNADNARQANQ+ SA+++A++GG +V VV TM I Sbjct: 292 AQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKD 351 Query: 356 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKE 415 SSRKIVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKE Sbjct: 352 SSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKE 411 Query: 416 IKALIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRA 475 IKALIDDSV KV+ GS LV +AG+TM+++V SV++V DI++EI++AS EQS GIE++N+A Sbjct: 412 IKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQA 471 Query: 476 VTQMDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKL-------AEAEMKKTSAPA 528 ++QMDE TQQNAALVEQ+AAAA++MQ+QA +L+ A++IFKL + + + +APA Sbjct: 472 ISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPA 531 Query: 529 MVQPQPQPQPIRKPATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 + P + T P + T P +PI SA + D WE F Sbjct: 532 L--QAANPATTSRALTAAPHKQLETKPQKPI-SADKSG-----------DDWEEF 572 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 391 bits (1004), Expect = e-110, Method: Compositional matrix adjust. Identities = 237/468 (50%), Positives = 324/468 (69%), Gaps = 15/468 (3%) Query: 83 GNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEARQVFDTSRAE--LMALIR 140 G+E+ + E Q++E K + + + ++K+ A+++ AE L+A +R Sbjct: 79 GSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAKRIRYLKEAEQGLIAALR 138 Query: 141 AGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKAVEDGAMAIEVTLACSA 200 AG+ + + ++ K+ + L ++ + Q+ + A +D + Sbjct: 139 AGRNEEVEDILVNKMPPL---FQSLTKSTDELVELQMKS-AATGYQDSQTLFHYFRIIAV 194 Query: 201 VAVLASII----LGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHSKDETGQLMQALR 256 V VL +I + + R+I PL E + + +ASGDLT+ I S++E G LM L+ Sbjct: 195 VGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQ 254 Query: 257 KMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVR 316 KM L + V+ VR G+ +I+TA+ EIA+GNLDLS+RTEQQA SLEETAS+MEE+TSTV+ Sbjct: 255 KMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVK 314 Query: 317 QNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDIIGVIDGIAFQTNI 376 QN DNARQANQ+A SAS +A++GG +V VV+TM+ IN S+RKIVDIIGVIDGIAFQTNI Sbjct: 315 QNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNI 374 Query: 377 LALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSVAKVEGGSHLVAE 436 LALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LIDDSV KV+ G+ LVAE Sbjct: 375 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAE 434 Query: 437 AGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQSAAA 496 AGTTM +VV+SV+ VTDI++EI AAS EQS+GIE++N A+ QMDE TQQNAALVEQ+AAA Sbjct: 435 AGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAA 494 Query: 497 AKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIR-KPA 543 A ++++QA +L+ +S+FKL + SAP + PQ +P+ + +PA Sbjct: 495 ASSLRDQATNLSTVVSVFKLQGHQ----SAPQNLVPQARPKALESRPA 538 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 775,169 Number of extensions: 25873 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 15 Length of query: 583 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 496 Effective length of database: 713,682 Effective search space: 353986272 Effective search space used: 353986272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)