BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2480.p (669 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096570|ref|YP_001101645.1| putative signal peptide [Hermin... 390 e-109 gi|134094666|ref|YP_001099741.1| hypothetical protein HEAR1443 [... 79 7e-16 >gi|134096570|ref|YP_001101645.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 673 Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust. Identities = 212/664 (31%), Positives = 357/664 (53%), Gaps = 29/664 (4%) Query: 9 PRRRTIVRIFTWSIAALAALLAVPILLVALLDWNLLKPWLSRQFSVVLSREIRLDGPISL 68 PR + +I WS +ALL ++ + DWN +PW++ S R+ ++G ++L Sbjct: 2 PRTK---KIMLWSAIGSSALLFACVIFLLAFDWNHARPWINTHVSAATGRDFAINGDLAL 58 Query: 69 SWSLAPSSPQGGVSWLPQLHLTAQDLQIGNPAWAHSAAHLLRAQRLDLHFSPLPLLRWHW 128 +W S W+P L+A D+ + NP W+ S +++ + +PLPLL Sbjct: 59 TWQRPQVSTGTWRDWVPVPRLSAHDVSLSNPDWSRSGPNMVEVGHITFSVNPLPLLNKTI 118 Query: 129 HVTDLRIDGLDLVMERVDEHHKNWRFSDQPRSRWSFDIHQIVFDHALIRYVDQPLDLDLR 188 + L++D + +ER+ + NW F+ S W+ D+ ++F + D+ +D + Sbjct: 119 VIPTLQLDDPIVKLERLRDGRNNWTFTQNAPSAWTLDLQGLLFYKGEVSLKDEIKHIDAK 178 Query: 189 FDVRPLTSDINRAAALRDQRDQRDDGALMLQAAVSGRYGQAPVQGQLRGGALPDLLNEGS 248 + D + +A D ++ +SG + A + G + GAL L + Sbjct: 179 ASI-----DTLQPSAAND---------FVMDWKLSGTFNGARISGDGKAGALLALKSVDK 224 Query: 249 VYPLQAEGEVGAVHTVIHGNLIEPHHLQRADLRIRLSGDSLDRLYAATGVPLPSTQPFST 308 +PLQA VG + G++ +P L D+++ LSG S+ LY TG+ LP T FST Sbjct: 225 PFPLQARLNVGKTSIRVKGSVTKPQDLAAIDMQLHLSGASMADLYPLTGITLPKTPEFST 284 Query: 309 SGQLTITRVDAETRAWNWRYEHFSGKVGDSDFAGDATYYRGPPKNHLTVQAEAALLRLSD 368 G LT T W Y+ F GKVG+SD +G Y P+ L+ + LLRLSD Sbjct: 285 EGHLTGT---TNALGGKWTYDKFRGKVGESDISGTLMYESKKPRPLLSGTVVSNLLRLSD 341 Query: 369 YLPAAGT------KEAGGSS---KSRVLPEKPAQPQRWAKLNADISLQAKRVQLRPDLEW 419 G KE G ++ +++VLP + +RW ++AD+ + +++ L Sbjct: 342 LGTIIGADSNESKKERGVAASQPENKVLPVEKFTTERWGSIDADVKISGRKIIRDASLPI 401 Query: 420 QDASVTLRLQDQVLTAAPLRFSMAGGKGEGELSLDGRQSEIGSHLQVRLHELQVRQLFPR 479 ++ L+L D+++T PL F +AGG + LDGR I + ++ L+++QLFP Sbjct: 402 ENLDTHLKLNDRIVTLTPLNFGVAGGNMIANIKLDGRNDIIKAEAKISARHLKLKQLFPT 461 Query: 480 LAKLDASFGKLDGQATLTGQGNSVTAMLASAHGEIQADLSQGTISQFILEAAGLNLANAV 539 + ASFG+++G +L+ GNS+ +MLAS++GEI+A +S+GTIS+ +LE GLN+ N + Sbjct: 462 FQPMQASFGEINGDTSLSATGNSIASMLASSNGEIKALISEGTISKLLLEQIGLNIGNII 521 Query: 540 FAKFYRDQQVKLLCGAADVRIQNGLAQVRRGILNTEDAAIDISGEVDLGKQSLALNVYPR 599 ++ + D+QV+L C A+D+ + NG+ Q R I++T+DA + ++G++DL ++ L L + P+ Sbjct: 522 LSELFGDKQVQLNCMASDLTVTNGIIQTRTLIVDTDDATLYVTGKIDLAQEKLDLTINPK 581 Query: 600 TKQMRILSLRTPLYVRGSFAKPDIGASKSGLAARTGAAAALALVAPMAAVIPLVTPGQAI 659 +K +RI+SLRTP+YV G F P + K LA + G+A L +AP+ A++PLV G Sbjct: 582 SKGLRIVSLRTPIYVAGDFKNPRVNVDKGVLALKAGSAIVLGALAPVTALLPLVNVGSNE 641 Query: 660 PDDC 663 + C Sbjct: 642 DNKC 645 >gi|134094666|ref|YP_001099741.1| hypothetical protein HEAR1443 [Herminiimonas arsenicoxydans] Length = 645 Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 143/657 (21%), Positives = 263/657 (40%), Gaps = 71/657 (10%) Query: 16 RIFTWSIAALA-ALLAVPILLVALLDWNLLKPWLSRQFSVVLSREIRLDGPISLSWSLAP 74 +I W LA AL+ +L D LK Q L+RE+ LD + SL P Sbjct: 6 KIMLWGAGGLALALVIAASILYTQTDSAHLKIIARDQARQALARELMLD---EIDLSLFP 62 Query: 75 SSPQGGVSWLPQLHLTAQDLQIGNPAWAHSAAHLLRAQRLDLHFSPLPLLRWHWHVTDLR 134 PQLH A+++ + NPAWA H L + LPLL ++ L Sbjct: 63 ---------YPQLH--AKNITLSNPAWAQ-GQHFLEVSSATAQLALLPLLSGRIILSGLH 110 Query: 135 IDGLDLVMERVDEHHKNWRFSDQPRSRWS-FDIHQIVFDHALIRYVDQPLDLDLRFDVRP 193 ++GL +E + +NW F D + S + + H+ IR+ D + ++ V Sbjct: 111 LEGLQANLEIAADGKRNWEFPDVDAASLSDMTLTSMSVLHSNIRFRDGKKE-SAQWQVLS 169 Query: 194 LTSDINRAAALRDQRDQRDDGALMLQAAVSGRYGQAPVQG----QLRGGA--LPDLLNEG 247 L +D G LQ ++G V+ QL G L L G Sbjct: 170 LHAD----------------GGHGLQRV---KFGMKVVRDNHLLQLDGKLDDLSQLGKPG 210 Query: 248 SVYPLQAEGEVGAVHTVIHGNLIEPHHLQRADLRIRLSGDSLDRLYAATGVPLPSTQPFS 307 +V P G + G + LQ D+ + +S+ ++ G+ PS P Sbjct: 211 AVSPGIVHATSGQAKITVSGKIPLDLALQNYDIAASIEAESMQDMFGFFGIQRPSPVPLK 270 Query: 308 TSGQLTITRVDAETRAWNWRYEHFSGKVGDSDFAGDATY--YRGPPKNHLTVQAEAALLR 365 G++ + + +T + R +G + +GD + P H +QA+ + Sbjct: 271 --GEMKLHAANKKTEIADVRLH-----MGKLNLSGDGRWDDSGSKPVFHARLQADKIDM- 322 Query: 366 LSDYL----PAAGTKEAGGSSKSRVLPEKPAQPQRWAKLNADISLQAKRVQLRPDLEWQD 421 + +L P+ K+ G + + L + A++++ A +++R +E D Sbjct: 323 VQTFLDIGQPSLPPKKTGQLFRDQALAWPLLLDLEGTQGTAEVNIAA--LKIRSGIEVAD 380 Query: 422 ASVTLRLQDQVLTAAPLRFSMAGGKGEGELSLDGRQSEIGSHLQVRLHELQVRQLFPRLA 481 A+ + D + + GG+ G+ +GR+ + HL +++ + + Q F + Sbjct: 381 ATARMSFNDDRMKVEAFSGKLLGGRASGDALFEGRKEAV--HLNLQMTDTTLEQWFRQSG 438 Query: 482 K-LDASFGKLDGQATLTGQGNSVTAMLASAHGEIQADLSQGTISQFILEAAGLNLANAVF 540 K + + G + A + G S+ + A+ G + + I A L Sbjct: 439 KNIAITGGAMKVDARIDATGTSMNDLAATLSGPVNIQVGAAKILSPKAGNAEFWLTGLFS 498 Query: 541 AKFYRDQQVKLLCGAADVRIQNGLAQVRRGILNTEDAAIDIS-GEVDLGKQSLALNVYPR 599 A+ ++V L C +A + Q+G+A+ + DA+ ++ G V+L Q+L L R Sbjct: 499 AR--DSERVDLSCVSARLPFQSGVARGEAIVGARSDASQLLTRGTVNLRDQTLDLRGRIR 556 Query: 600 TK---QMRILSLRTPLYVRGSFAKPDIGASKS---GLAARTGAAAALALVAPMAAVI 650 + + I + + + G P++ ++ G+ AR GAA + ++ +A I Sbjct: 557 ARSGINLGISNFAGEVKIVGKLVNPELSMDETGAVGVIARIGAAILTSGMSVLATSI 613 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,240,401 Number of extensions: 50322 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 2 Length of query: 669 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 581 Effective length of database: 710,387 Effective search space: 412734847 Effective search space used: 412734847 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)