BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2478.p (302 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arse... 152 2e-38 gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arse... 152 2e-38 gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arse... 152 2e-38 gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arse... 152 2e-38 gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arse... 152 2e-38 >gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 4 YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 63 ++ ++R I V C L V+ S + YA R P C R + L + + + Sbjct: 5 FVAKHRGIWPVALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSD 59 Query: 64 RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVN 122 R YGA +VW L G VERLM+ Q L+ R + L R + P + ++ Sbjct: 60 RTYGARRVWHDLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLD 119 Query: 123 RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQA 182 RQF A PN+ WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A Sbjct: 120 RQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMA 179 Query: 183 LYAR-QPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLY 241 ++ R +PE ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ Sbjct: 180 VWRRGKPE---SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSL 236 Query: 242 KAELIHRRAPWKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 287 K E + R+ ++TR+ + +++ ++N R ++GYI P + E Sbjct: 237 KTERLSRKM-FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 4 YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 63 ++ ++R I V C L V+ S + YA R P C R + L + + + Sbjct: 5 FVAKHRGIWPVALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSD 59 Query: 64 RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVN 122 R YGA +VW L G VERLM+ Q L+ R + L R + P + ++ Sbjct: 60 RTYGARRVWHDLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLD 119 Query: 123 RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQA 182 RQF A PN+ WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A Sbjct: 120 RQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMA 179 Query: 183 LYAR-QPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLY 241 ++ R +PE ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ Sbjct: 180 VWRRGKPE---SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSL 236 Query: 242 KAELIHRRAPWKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 287 K E + R+ ++TR+ + +++ ++N R ++GYI P + E Sbjct: 237 KTERLSRKM-FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 4 YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 63 ++ ++R I V C L V+ S + YA R P C R + L + + + Sbjct: 5 FVAKHRGIWPVALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSD 59 Query: 64 RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVN 122 R YGA +VW L G VERLM+ Q L+ R + L R + P + ++ Sbjct: 60 RTYGARRVWHDLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLD 119 Query: 123 RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQA 182 RQF A PN+ WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A Sbjct: 120 RQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMA 179 Query: 183 LYAR-QPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLY 241 ++ R +PE ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ Sbjct: 180 VWRRGKPE---SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSL 236 Query: 242 KAELIHRRAPWKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 287 K E + R+ ++TR+ + +++ ++N R ++GYI P + E Sbjct: 237 KTERLSRKM-FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134094371|ref|YP_001099446.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 4 YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 63 ++ ++R I V C L V+ S + YA R P C R + L + + + Sbjct: 5 FVAKHRGIWPVALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSD 59 Query: 64 RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVN 122 R YGA +VW L G VERLM+ Q L+ R + L R + P + ++ Sbjct: 60 RTYGARRVWHDLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLD 119 Query: 123 RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQA 182 RQF A PN+ WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A Sbjct: 120 RQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMA 179 Query: 183 LYAR-QPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLY 241 ++ R +PE ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ Sbjct: 180 VWRRGKPE---SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSL 236 Query: 242 KAELIHRRAPWKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 287 K E + R+ ++TR+ + +++ ++N R ++GYI P + E Sbjct: 237 KTERLSRKM-FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 >gi|134093805|ref|YP_001098880.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 12/287 (4%) Query: 4 YIDRYRDIHGVEPICKVLQVAPSAYRRYAARQRNPQLCCARSKRDAVLRVEISRVWHANM 63 ++ ++R I V C L V+ S + YA R P C R + L + + + Sbjct: 5 FVAKHRGIWPVALTCDTLGVSRSGF--YAWLTRTP---CKRRTENEQLGRAVHHSFIQSD 59 Query: 64 RVYGADKVWRQLNREGVSIARCTVERLMRKQGLQGARRGKQLRTTRSD-PKAACPLDRVN 122 R YGA +VW L G VERLM+ Q L+ R + L R + P + ++ Sbjct: 60 RTYGARRVWHDLLASGYRCGLHRVERLMQAQALRARPRRRSLPIDRGERPVIGIAANVLD 119 Query: 123 RQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSNSMTTDFVLDALEQA 182 RQF A PN+ WV+DFTY+ + +GWLY+A V+D+++RR++GW + M V DAL A Sbjct: 120 RQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMMA 179 Query: 183 LYAR-QPEGNGGLIHHSDRGSQYVGIRYSERLAEAGIAPSVGSRGDSYDNALAETINGLY 241 ++ R +PE ++HHSDRGSQY ++ L E G+ S+ G+ +DN+ E+ Sbjct: 180 VWRRGKPE---SVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSL 236 Query: 242 KAELIHRRAPWKTRESVELATLEWVA-WFNHHRLLESIGYIPPAEAE 287 K E + R+ ++TR+ + +++ ++N R ++GYI P + E Sbjct: 237 KTERLSRKM-FRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFE 282 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 582,938 Number of extensions: 23331 Number of successful extensions: 74 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 9 Length of query: 302 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 221 Effective length of database: 733,452 Effective search space: 162092892 Effective search space used: 162092892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)