BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2476.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094664|ref|YP_001099739.1| hypothetical protein HEAR1441 [...   235   1e-63

>gi|134094664|ref|YP_001099739.1| hypothetical protein HEAR1441
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score =  235 bits (600), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 163/225 (72%)

Query: 4   FHLEHHKVDAISWLRAAVLGANDGIVSTASLLVGVVAANASHDNVLLTGVAGLVAGAMSM 63
           +H EHH+ D I WLRA+VLGANDGI+STA L++GV AANA    +L+ GVA LVAGAMSM
Sbjct: 5   YHSEHHRNDRIGWLRASVLGANDGIISTACLMLGVAAANADRSELLVAGVAALVAGAMSM 64

Query: 64  ATGEYVSVHSQADSEKAALSQEQEELATDPEGEHRELMGIYMRRGLNQETAHLVATQLMA 123
           A GEYVSV SQ+D+E+A L +E+ EL   P  E REL  IY  RG+  E A  VA QLMA
Sbjct: 65  AAGEYVSVSSQSDTEQADLERERVELRDQPAAEQRELASIYTARGVAPELAMQVAQQLMA 124

Query: 124 HDALDAHARDELGISETTAARPVQAALVSALSFAVGAALPLAVVLLAPAATLLPAIVIAA 183
           HDAL AHARDELGI +T+AA+PVQAA+ SAL+F+ GAALPL   L+AP + L+ ++   +
Sbjct: 125 HDALSAHARDELGIHDTSAAQPVQAAIASALTFSAGAALPLVTALIAPPSMLIASLTATS 184

Query: 184 LLSLAVLGAVAAKTGGANLWKGALRVSVWSSLAMACTAAIGSFFG 228
           LL L  LG +AAK GGA L + A+RV  W +LAM  TA IG  FG
Sbjct: 185 LLFLIALGMLAAKAGGAPLLRAAVRVGFWGALAMGVTAGIGKLFG 229


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 357,333
Number of extensions: 11760
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)