BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2474.p
         (142 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094150|ref|YP_001099225.1| hypothetical protein HEAR0914 [...   162   7e-42

>gi|134094150|ref|YP_001099225.1| hypothetical protein HEAR0914
           [Herminiimonas arsenicoxydans]
          Length = 147

 Score =  162 bits (410), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 101/128 (78%)

Query: 11  VAGLIFGLGLIVSGMANPAKVLGFLDLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSL 70
           VAGL+FGLGLIVSGMANP+KVLGFLDLAG WDPSLA VM GA+ +G  AF +A K Q+SL
Sbjct: 8   VAGLVFGLGLIVSGMANPSKVLGFLDLAGNWDPSLAFVMGGALLVGSLAFPFANKWQRSL 67

Query: 71  LGAPLQLPSATGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLAMLAGM 130
           LG  + LP+AT IDRRLVLG L FGVGWG+AG CPGPALV L  G  K L F +AM+AGM
Sbjct: 68  LGEAIHLPTATKIDRRLVLGGLTFGVGWGLAGYCPGPALVSLAQGGAKPLLFFVAMIAGM 127

Query: 131 KLFGWLQR 138
            +F  L+R
Sbjct: 128 LVFELLER 135


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 313,333
Number of extensions: 14420
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 69
Effective length of database: 759,812
Effective search space: 52427028
Effective search space used: 52427028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)