BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2472.p
         (105 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094152|ref|YP_001099227.1| ArsR family transcriptional reg...   112   5e-27

>gi|134094152|ref|YP_001099227.1| ArsR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 147

 Score =  112 bits (279), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 71/95 (74%)

Query: 11  QMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLGVLRTEG 70
           +++ +A QA   LK+LAN DRLLL+CQ++Q E  V ELE    IRQPTLSQQL VLR E 
Sbjct: 50  KLQASAVQACGLLKILANSDRLLLLCQMTQGEYSVGELETMTGIRQPTLSQQLSVLREEM 109

Query: 71  VVSTRREGKRVYYRVADPRLLEMLGLMYHLYCPKE 105
           VV+TRREGK+++Y +A P  L +L ++Y LYCPK+
Sbjct: 110 VVNTRREGKQIFYSIASPEALAVLQVLYQLYCPKD 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 173,330
Number of extensions: 5317
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 36
Effective length of database: 772,992
Effective search space: 27827712
Effective search space used: 27827712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 122 (51.6 bits)