BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2471.p (297 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095677|ref|YP_001100752.1| LysR family transcriptional reg... 135 2e-33 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 70 1e-13 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 69 3e-13 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 66 2e-12 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 59 3e-10 >gi|134095677|ref|YP_001100752.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 296 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 2/274 (0%) Query: 6 LNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDT 65 +N+ HL YFW VAK G + RA+E LH + +S QI E L LF R GRRL L D Sbjct: 1 MNYKHLHYFWVVAKAGGIGRASERLHLTPQTISGQITLFEDVLGYKLFNRIGRRLELNDA 60 Query: 66 GQLVFTYADNIFGLSQEMLGRLEGRSAG-VTRLRVGSVATLSRNYQENWIRPMLSDP-SV 123 G++V YAD IF L +E+ L R G + RVG + + + P + P S+ Sbjct: 61 GRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELPESL 120 Query: 124 SLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRWEAR 183 L G L LL L H+LD+V+A+ +P++ D + LG V+ + Sbjct: 121 RLVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGVTFFATDELAKEY 180 Query: 184 SLRIPQDLEGLDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSGWLT 243 P+ L+G +PG A+R + VRPR+ E DD A+L+ + Sbjct: 181 EEGFPKSLDGAPFLMPGEDAAVRPRLIRWFEKEKVRPRIIGEFDDGALLQAFGGAGKGIF 240 Query: 244 VLPEVVVQDELRNGTLVAAGQASELVESFYAITT 277 P V ++ + G+ S + E FYAI+ Sbjct: 241 AAPSAVADQIIKQYGVTEIGRTSLVTEQFYAISV 274 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 11 LRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDTGQLVF 70 LR F V G TRAA+ +H +QS +S QIR+LE Q+ DL R GR +T T G+ + Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 71 TYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD-----PSVSL 125 YA I L E + ++ +SAG +R+G + ++ + P LS +V L Sbjct: 67 RYAHRIAQLMDEAMEQI-AQSAGKGEVRLG----VPEDFVGRALTPTLSAFIDTYSAVRL 121 Query: 126 TLESGLLEGLLERLMQHQLDVVLANETVPSDP 157 + SG+ L +R + +LD+ L + V S P Sbjct: 122 EVSSGMSHELWQRFQRGELDLALIKQRVGSMP 153 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 26/192 (13%) Query: 6 LNFHHLRYFWRVAKLG-HLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLT-LT 63 +NF LR A+ G +LT A L TSQ VS QIR+LE++L D+F R G+RLT LT Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 64 DTGQLVFTYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD--- 120 D G+ + T D + L E L R AG +G++A + + Q ++ P + Sbjct: 61 DPGRGILTIIDRLL-LEAENLQRASQEYAG---QEIGTLAVATTHTQARYMLPEVVQAFR 116 Query: 121 ---PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPA 177 P V + L+ E + E ++ + D+ +A E + D V P Sbjct: 117 AEFPKVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDL-------------VSFPC 163 Query: 178 HRWEARSLRIPQ 189 +RW ++ +PQ Sbjct: 164 YRWH-HAIVVPQ 174 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 16/258 (6%) Query: 6 LNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDT 65 + L+Y VA+ H AAE H +Q +S I++LE +L LF R G +++T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 66 GQLVFTYADNIFGLSQEM--LGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD-PS 122 G + A+ + + + + + + + V R+G + T++ ++ M+ P Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAK-QNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQ 119 Query: 123 VSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHR-WE 181 + L L+ LLE+L Q ++D + + PD+ L + + + V P H W Sbjct: 120 MPLVLQENFTVKLLEQLRQGEIDAAIVALPI---PDQGLLVQPVYDEPFVVAVPKHHPWA 176 Query: 182 ARSLRIPQDLEGLDMALPGPRHALRMQFDALC-------ISNDVRPRMRAEVDDMAMLRL 234 RS +L+ M L G H R Q +C S D R E + +R Sbjct: 177 ERSSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIART-FEGSSLETIRH 235 Query: 235 IARDSGWLTVLPEVVVQD 252 + +TVLP+ V D Sbjct: 236 MVASGIGITVLPQASVPD 253 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 8/181 (4%) Query: 11 LRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDTGQLVF 70 L+ F VA+L +RAAEELH +Q AVS Q+++LE LF + G+++ LT G + Sbjct: 53 LKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTELL 112 Query: 71 TYADNI---FGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSDPSVSLTL 127 Y+ I F +++ + + +G + G +L V ++ + + S V+L L Sbjct: 113 HYSRTIIQQFQEAEDAMTQFKGITGG--KLNVAVISAGDYFFPRLLVEFARSHQGVTLNL 170 Query: 128 ESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRWEARSLRI 187 EGLL +L + D+ + P+D D ++ F V V P H ++ I Sbjct: 171 SVHNREGLLNQLANNLTDLAIMVRP-PTDMDT-INEPFAPHPYVIVAAPDHHLVSKK-NI 227 Query: 188 P 188 P Sbjct: 228 P 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 530,350 Number of extensions: 19537 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 8 Length of query: 297 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 216 Effective length of database: 733,452 Effective search space: 158425632 Effective search space used: 158425632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)