BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2470.p
         (530 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095020|ref|YP_001100095.1| NADH dehydrogenase I subunit L ...   123   3e-29
gi|134096164|ref|YP_001101239.1| putative monovalent cation/H+ a...    72   6e-14

>gi|134095020|ref|YP_001100095.1| NADH dehydrogenase I subunit L
           [Herminiimonas arsenicoxydans]
          Length = 687

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 140/257 (54%), Gaps = 8/257 (3%)

Query: 105 FSARYLEGEPGQRQYAAALAAVLCAVHLLLLADHWIVLIAAWAVVGLALQRLLCFYPERP 164
           ++  Y+E + G  ++ + ++    A+ +L+++++++ L   W  VGL    L+ F+  +P
Sbjct: 111 YTIGYMEEDEGYNRFFSYISLFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKP 170

Query: 165 FARLASFKKSIADRLADLLLIAAAVLAWTTVGSGSLPALWAHLAQYGMST--G-----LQ 217
            A +A+ K  + +R+ D   I    L     GS     ++A   +  + T  G     L 
Sbjct: 171 TAVVANMKAFLVNRIGDFGFILGIGLLLAYAGSMDYAEVFAKKDELALLTLPGTDWMLLT 230

Query: 218 ASAMCLTLAVILRTALLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLVRFAPLLEQA 276
            + +CL +  + ++A  P+H WL   ME PTP+SAL+HA  +V  G F++ R +PL E +
Sbjct: 231 VACICLFIGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELS 290

Query: 277 LPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFMLLECAAGLYLFAALHLI 336
             A S +L++ + T L  G + + +  IK  +A+ST++Q+G+M +   A  Y  A  HL+
Sbjct: 291 DTALSFILIIGSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLM 350

Query: 337 GHSLYKAHAFLSASSVV 353
            H+ +KA  FL+A SV+
Sbjct: 351 THAFFKALLFLAAGSVI 367


>gi|134096164|ref|YP_001101239.1| putative monovalent cation/H+
           antiporter subunit A [Herminiimonas arsenicoxydans]
          Length = 974

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 107 ARYL--EGEPGQRQYAAALAAVLCAVHLLLLADHWIVLIAAWAVVGLALQRLLCFYPERP 164
           ARY   E +P  R + + L A + ++  ++L+ + I L+  W +  +    L+ ++  R 
Sbjct: 103 ARYYMSEQDPVPR-FFSFLLAFMGSMLGVVLSGNLIQLVVFWELTSITSFLLIGYWHHRI 161

Query: 165 FARLASFKKSIADRLADLLLIAAAVLAWTTVGSGSLPALWAHLAQYGMSTGLQASAMCLT 224
            AR  +           L L+   ++    VGS  L  + A   +        A+ + + 
Sbjct: 162 DARRGARMAFTVTATGGLCLLCGVLIIGHIVGSYDLEVVLAAGDKIRAHDWYLAALILVA 221

Query: 225 LAVILRTALLPVHGWLIQVMEAPTPVSALLH-AGVVNLGGFVLVRFAPLLEQALPARSVL 283
           L  + ++A  P H WL   M APTPVS+ LH A +V  G F+L+RF P+L        ++
Sbjct: 222 LGALTKSAQFPFHFWLPHAMAAPTPVSSYLHSATMVKAGVFLLMRFWPVLSGTEEWAWII 281

Query: 284 LLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFM--LLECAAGLYLFAAL-HLIGHSL 340
                 T+LL   V + +  +K  LA+ST++ +G +  LL   + L + AA+ H + H++
Sbjct: 282 AGAGVCTLLLGSFVAIFQHDLKGLLAYSTISHLGLITVLLGIGSPLGMVAAIFHTVNHAI 341

Query: 341 YKAHAFLSASSVVRET 356
           +KA  F++A  +  ET
Sbjct: 342 FKASLFMAAGIIDHET 357


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 750,694
Number of extensions: 24430
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 3
Length of query: 530
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 444
Effective length of database: 716,977
Effective search space: 318337788
Effective search space used: 318337788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)