BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2461.p
         (309 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD [Her...    78   5e-16
gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance ...    76   3e-15

>gi|134093788|ref|YP_001098863.1| cation efflux protein CzcD
           [Herminiimonas arsenicoxydans]
          Length = 298

 Score = 78.2 bits (191), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 12  DTDHTRQDRTKAASQSTWVSVAVNLLLTLLQIMAGVFSKSQGLIADGIHSLSDLVADFVV 71
            T+H+         ++  +++A+     + +++ G  + S  LI+D  H  +D  A  + 
Sbjct: 2   STEHSHVAAGTGNERALLIALALTSCFLIAEVIGGFITGSLALISDAAHMFTDSAALAIA 61

Query: 72  LLANHHSKKDADEEHPYGHHRFETAASLVLGMLLLTVGLGMLWSAIVKLDNPKSVQEVHV 131
           L+A    K+ A+++  +G++RFE  A+ V  +LL  V + +++ A  +  NP  +Q + +
Sbjct: 62  LVAIKVGKRLANKKRTFGYYRFEILAAAVNAILLFAVAIYIIFEAYQRFKNPPEIQSMGM 121

Query: 132 LALWVAGGALLAKELLFRYMLSVAKRVKSSMLVA--NAWHARSDAASSLVVGIG-IAGNL 188
           LA+ +AG   L   L+   +LS  K    +M  A    W   SD   S+ V +G +    
Sbjct: 122 LAIAIAG---LCINLISMRILSGGKDNSINMKGAYLEVW---SDMLGSIGVIVGALVIGW 175

Query: 189 AGYPILDPIAALIVGVMVVKMGWEFAWEALHDLMDRAVDQDELEAICRTLLETPGVNGIH 248
            G+  +D + A+ +G+ V+   W+   ++L+ L++   +  +L AI +  L  PGV  IH
Sbjct: 176 TGWSWVDSVIAVAIGLWVLPRTWKLLSDSLNILLEGVPEGTDLTAIEQATLALPGVKSIH 235

Query: 249 DV 250
           D+
Sbjct: 236 DL 237


>gi|134094815|ref|YP_001099890.1| cobalt-zinc-cadmium resistance
           protein czcD [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 15  HTRQDRTKAASQSTWVSVAVNLLLTLLQIMAGVFSKSQGLIADGIHSLSDLVADFVVLLA 74
           HT    T+   +   +++ +     + +++AG  + S  L++D  H L+D  A  + L+A
Sbjct: 5   HTHALPTRQNQKYLLIALGLTSTFLIAEVVAGFITGSLALLSDAAHMLTDASALAIALVA 64

Query: 75  NHHSKKDADEEHPYGHHRFETAASLVLGMLLLTVGLGMLWSAIVKLDNPKSVQEVHVLAL 134
               K+ AD+   +G+ RFE  A+    +LL  V + +L+ A  +  +P  ++   +L +
Sbjct: 65  IQIGKRPADKRRTFGYLRFEILAAAFNAILLFLVAMYILYEAYQRFRSPIEIESTGMLIV 124

Query: 135 WVAGGALLAKELLFRYMLSVAKRVKSSMLVANAW-HARSDAASSLVVGIG-IAGNLAGYP 192
              G   L   L+   +LS  K   SS+ +  A+    SD   S+ V IG +     G+ 
Sbjct: 125 ASLG---LVINLISMKLLSAGK--DSSLNIKGAYLEVWSDMLGSVGVIIGALVIRFTGWT 179

Query: 193 ILDPIAALIVGVMVVKMGWEFAWEALHDLMDRAVDQDELEAICRTLLETPGVNGIHDV 250
            +D + A+ +G  V+   W    E+++ L++   +  +LE + ++LLE P V  +HD+
Sbjct: 180 WVDSVIAVGIGFWVLPRTWVLLRESINVLLEGVPEGMDLEKLQQSLLEIPSVQSVHDL 237


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 526,981
Number of extensions: 18976
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 228
Effective length of database: 733,452
Effective search space: 167227056
Effective search space used: 167227056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)