BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2459.p (390 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 152 2e-38 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 150 8e-38 gi|134095406|ref|YP_001100481.1| lipoprotein releasing system AT... 149 3e-37 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 144 1e-35 gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 142 3e-35 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 141/244 (57%), Gaps = 7/244 (2%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 + ++ V K Y G Q L + +A G + + G SG+GKS+L++T+N LE G Sbjct: 2 IEMKNVSKWY----GSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGS 57 Query: 102 VEVDGVDLATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVAL-PLRVAGVPRLQVESR 160 + VDG+ + + L LR RIGM+FQ+F L ++ +N+ L +RV G + R Sbjct: 58 ITVDGISVGD-PKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAER 116 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 + L VGL + D +P +LSGGQ+QRV IARALA P +L DE TSALDPE + +L Sbjct: 117 GLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVL 176 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQAL 280 ++ + + G+T++++THEM R++A++V+ ++QG I E E FG R + Sbjct: 177 DVMVGLAQD-GMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDF 235 Query: 281 LAPL 284 LA + Sbjct: 236 LAKI 239 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 150 bits (380), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 13/236 (5%) Query: 41 SVALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSG 100 S+ ++ + K + G AL ++ LE G + ++G SG GK++LLR I LE P G Sbjct: 2 SIEVKNINKKF----GNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG 57 Query: 101 RVEVDGVDLATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESR 160 +V +DG D + + + R++G +FQH+ L TVF+N+A LRV ES Sbjct: 58 QVLLDGEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESV 112 Query: 161 VRE----LLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETT 216 ++E LL LV L AD YP +LSGGQ+QR+ +ARALA P +LL DE ALD + Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 217 HAILQLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHP 272 + + LR ++ +L +T I +TH+ E+ADQ++++ +G + ++G +V+ +P Sbjct: 173 KELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNP 228 >gi|134095406|ref|YP_001100481.1| lipoprotein releasing system ATP-binding protein lolD [Herminiimonas arsenicoxydans] Length = 228 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 2/216 (0%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 +A R + KT+T V L+ I+L+I G I+G SG+GKS+LL + L+TP++G Sbjct: 6 LACRDLAKTFTQGKYAVDVLKGINLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGS 65 Query: 102 VEVDGVDLATLNEGQLVDLRRR-IGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESR 160 V + D A+L+E +LR R +G ++Q +LL + DNVA+PL + VPR Q Sbjct: 66 VTLLHQDFASLDEKTRGNLRNRSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPREQAHET 125 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 R +LA VGL + P LSGG++QRV +ARAL + P +L DE T LD T H Sbjct: 126 ARAILARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRHTAHKTF 185 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQVLVLEQ 256 L+ E++R LG +++TH++ + D++L L Sbjct: 186 DLMLELSRTLGTAFVIVTHDIELATH-CDRILRLSD 220 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 129/210 (61%), Gaps = 6/210 (2%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 + LRGV KTY + V+ L IDL+I G I+G SG+GKS+L+ + L+ PT+G Sbjct: 17 IELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGS 76 Query: 102 VEVDGVDLATLNEGQLVDLRRR-IGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESR 160 G D++ + LRR G +FQ +NL+++ + +NV +P +G+P + +R Sbjct: 77 YYFMGRDVSDFGRDERALLRRDDFGFVFQSYNLIASASAAENVEVPAMYSGLPPAERHAR 136 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 + LL +GLAD++ P +LSGGQ+QRV I+RAL +G I+L DE T ALD ++ ++ Sbjct: 137 AQALLTELGLADRSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVM 196 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQ 250 +LL +++ + G T++LITH +E+AD Sbjct: 197 KLLADLSAR-GHTVLLITHA----KEVADH 221 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 8/214 (3%) Query: 49 KTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVD 108 K + G + LQ +D + G I+G SG+GKS+LL + L+TP+ G V++DG+D Sbjct: 18 KRVADATGELTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGID 77 Query: 109 LATLNEGQLVDLRR-RIGMIFQHFNLLSAKTVFDNVALPL--RVAGVPRLQVESRVRELL 165 + L+E LR+ +IG++FQ F LL +NV LPL R G R + E+ +L Sbjct: 78 IFALDEDGRAGLRKEKIGVVFQSFQLLGHLNAVENVMLPLELRNDGKAREKAEA----ML 133 Query: 166 ALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLRE 225 A VGL+ + YP+ LSGG++QRV +ARA S P +L DE T +LD T +++QL+ E Sbjct: 134 ARVGLSSRLKHYPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGESVIQLMFE 193 Query: 226 INRKLGITIILITHEMSVIREIADQVLVLEQGRI 259 +N++ T++L+TH+ S I + + + + GR+ Sbjct: 194 LNQERKSTLVLVTHDPS-IAALCKRTITIAAGRL 226 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 690,292 Number of extensions: 27115 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 51 Length of query: 390 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 306 Effective length of database: 723,567 Effective search space: 221411502 Effective search space used: 221411502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)