BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2457.p
         (263 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    74   1e-14
gi|134095851|ref|YP_001100926.1| putative transcriptional regula...    63   2e-11

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 34  MTLGDVASATGISKSSAQRMVHTLEALGYVCKHPKTRRYQLTPKVMEVGYNYLAADILV- 92
           ++L +++  TG+  S+A R+++ L  L       +   Y+L  +++E+G N + + + V 
Sbjct: 15  VSLKELSRVTGLHPSTAHRILNDL-VLKRFVDRSEPGAYRLGMRLLELG-NIVKSRLSVR 72

Query: 93  DVANPFLSELANITGETVNLTEPYHCEMVYVAR-FVASKFIPIHMPIGSRIPMYCTASGR 151
           + A   +  L   T +TVNL+   + E++Y+ R F     + +   IG R P++ T++G+
Sbjct: 73  EAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIGGRAPLHLTSTGK 132

Query: 152 AYLSALSAAEAQTILMASDRVVHTPHTLTEVDDIMQALVATRERGFASNREELFLGDMTI 211
            +LS       Q   + +  V H  +++T+++ +   L   R  G+A + EEL LG   +
Sbjct: 133 LFLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYARDNEELELGVRCM 192

Query: 212 ASPIFNSERTPVASVHVVAPTSR----WTLED 239
           A+ I +     +A + + AP  R    W LED
Sbjct: 193 AAGIHDDTGKLIAGLSISAPADRLQEEW-LED 223


>gi|134095851|ref|YP_001100926.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 15  QSLEKGLAVLR---AFNAQRRTMTLGDVASATGISKSSAQRMVHTLEALGYVCKHPKTRR 71
           QS+E+   +LR   +++A    + L D+A    + +++  R++  L   G V +HP T R
Sbjct: 18  QSIERAARILREIASYSAH--GLRLVDLARQLNLKRTTIHRILMCLIREGLVMQHPTTLR 75

Query: 72  YQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYHCEMVYVARFVASKF 131
           Y L   + E+G    +   L ++  P L  +A  TG T  +T     + + +AR      
Sbjct: 76  YMLGYSLFELGLTAASQFKLREICEPCLERIAKKTGHTAFMTIRSELDAISIARADPDPT 135

Query: 132 IPIHMP---IGSRIPMYCTASGRAYLSALSAAEAQTILMASDRVVHTPHTLTEVDDIMQA 188
            P+  P   +G   P+   A   A L +L   E + I+ A+ R +  P+    V  ++Q 
Sbjct: 136 KPMDEPAIELGVHRPLGVGAGSLAILISLPDDEIERIVSANARRL-GPYGKLTVPLLLQL 194

Query: 189 LVATRERGFASNREELFLGDMTIASPIFNSERTPVASVHVVA 230
               +E G++S+   +  G   +   + NSE  P+ ++ + A
Sbjct: 195 AREAQETGYSSHDSRMLDGLSGVGILVRNSEGAPLGAISITA 236


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 441,830
Number of extensions: 16237
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 183
Effective length of database: 736,747
Effective search space: 134824701
Effective search space used: 134824701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)