BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2455.p
         (218 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   107   3e-25
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    82   1e-17

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  107 bits (268), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 7   LDF------LPILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATIVNII 60
           LDF       P LL G   T+++T+ + +   L G LLAL ++S  K++A   A  VN++
Sbjct: 4   LDFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLM 63

Query: 61  RGLPIIVQLFYIYFVLP---------DIGIQFSAFHAGVIGLGIAYSAYQAENFRAGIEA 111
           R +P+++ +F+ YF++P         +  +Q  A  +  I   +  +AY  E  RAGI++
Sbjct: 64  RSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQS 123

Query: 112 VDVGQIEAAQSIGMRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTR 171
           +  GQ+ AA ++G+     MR V+LPQAFR  LP      +++ +D SLVS + V +   
Sbjct: 124 ISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVG 183

Query: 172 AGQMIASSTFQNMTVYTTVAVLYLLLSLPLVFLIRRLEIR 211
           A   IA    + + +Y  VA++Y +LS  L  ++++L+ R
Sbjct: 184 ASVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKR 223


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 12  ILLQGALVTVEVTILSFLLSSLLGLLLALMKVSRIKAVALAGATIVNIIRGLPIIVQLFY 71
           +LL G   T+ V   +++ + +LG L+ + + +  + +   G   V + R +P++VQ F 
Sbjct: 20  MLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFV 79

Query: 72  IYFVLPDI-----------GIQFSAFHAGVIGLGIAYSAYQAENFRAGIEAVDVGQIEAA 120
            YFV+P +                 F   +I LG   S+  AE  R+GI+++  GQ  A 
Sbjct: 80  WYFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAG 139

Query: 121 QSIGMRGPLIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASST 180
            ++G+ G    R V+LP A+RI +PP  + L+ ++K++++  +I ++E+    + +   T
Sbjct: 140 YALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMT 199

Query: 181 FQNMTVYTTVAVLYLLLSL 199
           F+    +    ++Y+++++
Sbjct: 200 FRYFEAFGAATLMYVVIAM 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.143    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 301,103
Number of extensions: 10629
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 140
Effective length of database: 743,337
Effective search space: 104067180
Effective search space used: 104067180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)