BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2454.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 261 2e-71 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 163 9e-42 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 154 3e-39 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 145 2e-36 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 145 2e-36 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 261 bits (668), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 173/240 (72%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIE+K +SK +G +VL D + SVA+G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 DG V ++ LR+R+GMVFQ F LFPH ++ EN+T G + V E+A + + Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L++VGL A+ D +P QLSGGQQQRVAIAR+LAM P A+LFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA DGMTM+VVTHEMGFAR+VA+RV F+ G+IVE + + R +DFL ++I Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLAKII 240 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 163 bits (412), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 10/243 (4%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 IEVK I+K FG L DVSL GE+ L+GPSG GK+T+LR I GLE + G +L+D Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEG----PVFVNRVPREQARGQA 117 G+ D++ H +VG VFQ + LF H TV EN+ G P R + + Sbjct: 63 GE----DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPA-ATRPSESVIKEKV 117 Query: 118 MALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLA 177 LLE V L D YP QLSGGQ+QR+A+AR+LA++P +L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMRTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 +R L + +T I VTH+ A EVAD++ ++ G + + G V + P FL Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 RRV 239 V Sbjct: 238 GNV 240 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 154 bits (390), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 146/247 (59%), Gaps = 15/247 (6%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYE-----R 55 +++VK ++ +G+ + L D++L+V G+V+ IGPSG GKST+LRC N + Sbjct: 34 VLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDLVDSCRVE 93 Query: 56 GDILIDGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFV---NRVPREQ 112 G++++DG+ V S ++ LR RVGMVFQ+ N FP +T+ ENV G + NR ++ Sbjct: 94 GEVIVDGRNVYERSVNVAELRRRVGMVFQKPNPFP-KTIYENVAYGLRLLGVKNRAQLDE 152 Query: 113 ARGQAM---ALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDP 169 +++ AL ++V R + LSGGQQQR+ IAR++A++PE +L DEP SALDP Sbjct: 153 VVERSLRQAALWDEV--KDRLHSSGLSLSGGQQQRLVIARAIALEPEVLLLDEPCSALDP 210 Query: 170 ELVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQH 229 ++ ++ L T+++VTH M A V+D F+ G +VE Q+ + P + Sbjct: 211 IATAKIEDLLDDLKQK-YTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVTDQMFTQPTN 269 Query: 230 ARTQDFL 236 +T D++ Sbjct: 270 KQTMDYI 276 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 137/237 (57%), Gaps = 6/237 (2%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 ++E++ +++ FG + V+ ++SLS+ GE L+GPSG GK+T+LR I G + + G IL+ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 DG + + +RT VFQ + LFPH TV N+ P+ + P+ + + + Sbjct: 63 DGVDLTGVPPEQRVVRT----VFQNYALFPHMTVAGNIAF-PLEMANTPKSEIKQKVDEA 117 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LE V L YP +LSGGQ+QRV+IAR+L +P+ +L DEP SALD +L ++ + Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 TLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 L + G+T + VTH+ A ++ R+ ++ G+I + ++ S P+ DF+ Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFI 234 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 2 IEVKRISKCFGQ--HEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDIL 59 +E R+ GQ HE++ +S ++ G++ CL+G SG GK+TVLR I G E G I Sbjct: 17 LESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSIT 76 Query: 60 IDGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMA 119 + G+ + ++G+VFQ + LFPH +V +NV G + P QAR A Sbjct: 77 LGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFG-LRKLAAPERQAR--IAA 133 Query: 120 LLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVM 179 LL VGLA++ +P +LSGGQQQRVA+AR+LA QP+ +L DEP S LD +L + + + Sbjct: 134 LLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEV 193 Query: 180 RTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFL 236 R + + G T ++VTH+ A +AD++ + G IV+ A + P + DF+ Sbjct: 194 RDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFI 251 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 427,635 Number of extensions: 16640 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 49 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)